Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

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C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22 in2p3-00530281, version 1 - 28 Oct 2010 image"); } return null; if (fileNames==null) return null; ImageStack stackPLU = null; // temporary stack (arg for projImagePLU contructor) ImagePlus projImagePLU = null; // Image to hold z-projection double min = Double.MAX_VALUE; double max = -Double.MAX_VALUE; for (i=0; i
C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22 IJ.showMessage("outputDir: files[0].getParentFile()+File.separator", outputDir+ "\n"+filename); new FileSaver(projImagePLU).saveAsTiff("filename"); } return projImagePLU; } in2p3-00530281, version 1 - 28 Oct 2010 */ /* Performs the projection using the current projection method. Calculates the values of pixels located at the same position in each slice of the stack param imp: the ImagePlus object on which to perform the projection Return the resulting ImagePlus object (projection of stackPLU) ImagePlus computePLUProjection(ImagePlus PLUImgStack) { // Validate the arguments. if(PLUImgStack==null) { IJ.noImage(); return null; } stackPLUSize = PLUImgStack.getStackSize(); if (stackPLUSize==0) throw new IllegalArgumentException("Empty stack."); // Create an empty stack to hold the projections. // It will have the same width, height, and color model as stackPLU. ImageStack tmp_out_stack = PLUImgStack.createEmptyStack(); // Initialize the ZProjector object. ZProjector zproj = new ZProjector(PLUImgStack); // Slices are numbered 1,2,...,n where n is the number of slices in the stack. startSlice = 1; stopSlice = stackPLUSize; zproj.setStartSlice(startSlice); zproj.setStopSlice(stopSlice); zproj.setMethod(method); // Check for RGB image (RGB stacks are supported) if(PLUImgStack.getBitDepth()==24 ) zproj.doRGBProjection(); else zproj.doProjection(); // Image to hold z-projection ImagePlus projImage = null; // ImageJ retourne une l'image de la + recente operation de projection projImage = zproj.getProjection(); // PROJECTION DONE ImageProcessor improc = projImage.getProcessor(); tmp_out_stack.addSlice("Projection_of_"+PLUImgStack.getTitle(), improc); // Constructs an ImagePlus from a stack. ImagePlus out_image = new ImagePlus("Projection_of_"+PLUImgStack.getTitle(), tmp_out_stack); out_image.show(); -8
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Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

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