Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22
in2p3-00530281, version 1 - 28 Oct 2010
}
/*
String sPrompt = "Debug mode ? ";
// debug = 1: Running in mode debug
debug = (int)(gd.getNextNumber());
pw.println("Method selected: " + ZProjector.METHODS[method]);
pw.println("operator selected: " + operators[operator]);
pw.println("Scaling: " + (ImageConverter.getDoScaling()?"true":"false"));
pw.println("weighted color: " + (Prefs.weightedColor?"true":"false"));
int size = width * height;
int nSlices = imp.getStackSize();
pw.println("Science Image Size ("+width+"x"+height+") = "+size);
pw.println("num Slices = " + nSlices);
pw.println("number of channels = " + imp.getNChannels()); // the number of channels.
pw.println("number of slices = " + imp.getNSlices());
pw.println("number of frames = " + imp.getNFrames());
pw.println("");
IJ.showStatus("Saving log...");
return true;
The method showAbout displays an about dialog.
*/
void showAbout() {
IJ.showMessage("PLU_RGB_avg version 3");
}
/*
Display a file open dialog, gets the directory and file name the user has selected.
If the user has cancelled, we return. Otherwise a non-nullimage is returned.
*/
public static ImagePlus openFile() {
// Open the specified file as a tiff image and returns an ImagePlus object if successful.
OpenDialog od = new OpenDialog("Select TIFF file", null);
// check that any TIFF file was selected
String dirname = od.getDirectory(); // Returns the selected directory
if (null == dirname) return null; // dialog was canceled
dirname = dirname.replace('\\', '/'); // Windows safe
if (!dirname.endsWith("/")) dirname += "/";
String filename = od.getFileName(); // Returns the selected file name
if (null == filename) {
return null;
} else if (!filename.endsWith(".tif")) {
IJ.showMessage("Not a TIFF file!");
return null;
}
// Show path
IJ.showStatus("Loading TIFF File: " + dirname + filename);
pw.println("directory = " + dirname);
pw.println("filename = " + filename);
File file = new File(dirname, filename);
-16