Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22
IJ.showMessage("outputDir: files[0].getParentFile()+File.separator", outputDir+
"\n"+filename);
new FileSaver(projImagePLU).saveAsTiff("filename");
}
return projImagePLU;
}
in2p3-00530281, version 1 - 28 Oct 2010
*/
/*
Performs the projection using the current projection method.
Calculates the values of pixels located at the same position
in each slice of the stack
param imp: the ImagePlus object on which to perform the projection
Return the resulting ImagePlus object (projection of stackPLU)
ImagePlus computePLUProjection(ImagePlus PLUImgStack) {
// Validate the arguments.
if(PLUImgStack==null) { IJ.noImage(); return null; }
stackPLUSize = PLUImgStack.getStackSize();
if (stackPLUSize==0)
throw new IllegalArgumentException("Empty stack.");
// Create an empty stack to hold the projections.
// It will have the same width, height, and color model as stackPLU.
ImageStack tmp_out_stack = PLUImgStack.createEmptyStack();
// Initialize the ZProjector object.
ZProjector zproj = new ZProjector(PLUImgStack);
// Slices are numbered 1,2,...,n where n is the number of slices in the stack.
startSlice = 1;
stopSlice = stackPLUSize;
zproj.setStartSlice(startSlice);
zproj.setStopSlice(stopSlice);
zproj.setMethod(method);
// Check for RGB image (RGB stacks are supported)
if(PLUImgStack.getBitDepth()==24 )
zproj.doRGBProjection();
else
zproj.doProjection();
// Image to hold z-projection
ImagePlus projImage = null;
// ImageJ retourne une l'image de la + recente operation de projection
projImage = zproj.getProjection();
// PROJECTION DONE
ImageProcessor improc = projImage.getProcessor();
tmp_out_stack.addSlice("Projection_of_"+PLUImgStack.getTitle(), improc);
// Constructs an ImagePlus from a stack.
ImagePlus out_image = new ImagePlus("Projection_of_"+PLUImgStack.getTitle(),
tmp_out_stack);
out_image.show();
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