Gene regulation in Streptococcus pneumoniae - RePub - Erasmus ...

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Gene regulation in Streptococcus pn
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Cover image by Duve van Boggelen (w
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Promotiecommissie Promotoren: Prof.
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CHAPTER 1 Introduction 7
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Introduction Figure 1. Infections c
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Interestingly, autolysis induced by
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histidine kinase is the sensor prot
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metabolism are often required for v
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egulatory systems, aiming to elucid
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11. Cockeran, R., A. J. Theron, H.
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33. Li, S., S. J. Kelly, E. Lamani,
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53. Romero, P., R. Lopez, and E. Ga
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CHAPTER 2 Regulation of gene expres
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Introduction Streptococcus pneumoni
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Materiaals and Meethods Gene regula
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(Invitrogen), 0.2 mM aminoallyl dUT
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Isolation of pneumococcal RNA durin
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Resultss and Discuussion Gene regul
Page 38 and 39: Table 1. Genes regulated by RR09 in
Page 40 and 41: phosphofructokinase, and a fructose
Page 42 and 43: Figure 4. Expression of rlrA and rr
Page 44 and 45: correlated well with our in vitro m
Page 46 and 47: Figure 7. Bacterial loads in blood
Page 48 and 49: Acknowledgments This work was suppo
Page 50 and 51: 10. Ibrahim, Y. M., A. R. Kerr, J.
Page 52 and 53: genome sequence of a virulent isola
Page 54 and 55: Gene regulation by RR09 in S. pneum
Page 56 and 57: Gene regulation by RR09 in S. pneum
Page 58 and 59: Table S4. Genes up- and downregulat
Page 60: Table S6. Genes up- and downregulat
Page 63 and 64: Chapter 3 Abstract 62 62 Previous s
Page 65 and 66: Chapter 3 between the wild-type and
Page 67 and 68: Chapter 3 S. pneumoniae TIGR4 by CS
Page 69 and 70: Chapter 3 performance liquid chroma
Page 71 and 72: Chapter 3 Results Transcriptional a
Page 73 and 74: Chapter 3 Table 3. Differentially e
Page 75 and 76: Chapter 3 Figure 2. Colonization mo
Page 77 and 78: Chapter 3 than the D39ΔpsaR-infect
Page 79 and 80: Chapter 3 effect was more severe fo
Page 81 and 82: Chapter 3 in TIGR4ΔpsaR. However,
Page 83 and 84: Chapter 3 References 1. Adrian, P.
Page 85 and 86: Chapter 3 21. Hemsley, C., E. Joyce
Page 87: Chapter 3 40. McCluskey, J., J. Hin
Page 91 and 92: Chapter 4 Abstract 90 90 CodY is a
Page 93 and 94: Chapter 4 is found that is, at leas
Page 95 and 96: Chapter 4 HindIII and PstI to creat
Page 97 and 98: Chapter 4 spr1436 EMSA fw TGCGTAAAC
Page 99 and 100: Chapter 4 codY coding sequence was
Page 101 and 102: Chapter 4 homogenizer (polytron PT
Page 103 and 104: Chapter 4 Results The CodY regulon
Page 105 and 106: Chapter 4 fatD sp1869 spd1649 iron-
Page 107 and 108: Chapter 4 Figure 1. Electrophoretic
Page 109 and 110: Chapter 4 Figure 2. DNase1 Footprin
Page 111 and 112: Chapter 4 role of CodY in this proc
Page 113 and 114: Chapter 4 112 112 Using DNAse1 foot
Page 115 and 116: Chapter 4 Acknowledgements We would
Page 117 and 118: Chapter 4 10. Claverys, J. P., B. G
Page 119 and 120: Chapter 4 30. Lanie, J. A., W. L. N
Page 121 and 122: Chapter 4 49. van Hijum, S. A., J.
Page 123 and 124: Chapter 5 Abstract 122 122 Several
Page 125 and 126: Chapter 5 pneumoniae contains a put
Page 127 and 128: Chapter 5 Table 1. Strains and plas
Page 129 and 130: Chapter 5 128 128 pTK21 pORI13 Pzwf
Page 131 and 132: Chapter 5 glnA-his # GGCGGTCTCTCATG
Page 133 and 134: Chapter 5 Scientific BV) per ml of
Page 135 and 136: Chapter 5 phenol/chloroform, 500 mg
Page 137 and 138: Chapter 5 Results Prediction of put
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Chapter 5 glutamine ABC transporter
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Chapter 5 repression of glnA expres
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Chapter 5 Regulation of gdhA by Gln
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Chapter 5 H6-GlnA and H6-GlnR are f
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Chapter 5 Figure 7. Adhesion of S.
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Chapter 5 148 148 Both GlnR and Cod
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Chapter 5 References 1. Almassy, R.
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Chapter 5 21. Kharat, A. S., and A.
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Chapter 5 43. Tamura, G. S., A. Nit
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156
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Chapter 6 Abstract 158 158 The tran
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Chapter 6 homologue is present, ind
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Chapter 6 dilutions were plated on
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Chapter 6 data were processed using
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Chapter 6 attenuated phenotype. Aft
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Chapter 6 Figure 4. Pneumonia model
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Chapter 6 170 170 Twelve genes were
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Chapter 6 spd1602 sp1817 trpE anthr
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Chapter 6 candidate for fibronectin
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Chapter 6 with the supply of nutrie
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Chapter 6 References 1. Beckmann, C
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Chapter 6 180 180 of variance and a
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182
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Chapter 7 Abstract 184 184 Efficien
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Chapter 7 Nitrogen metabolism 186 1
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Chapter 7 Figure 1. Models of trans
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Chapter 7 levels did not change exp
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Chapter 7 severely affected in thei
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Chapter 7 Enterococcus faecalis, Ba
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Chapter 7 11. Dineen, S. S., A. C.
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Chapter 7 33. Ochi, K., J. Kandala,
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200
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Chapter 8 202 202 Being one of the
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Chapter 8 for virulence in a seroty
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Chapter 8 206 206 Another important
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Chapter 8 11. Hava, D. L., and A. C
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Chapter 8 31. Song, X. M., W. Conno
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Samenvatting en discussie 212 212 S
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eguleren namelijk, twee two-compone
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met behulp van muizen. Ook is er na
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List of Publications List of public
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jou en de rest van de Molecular Med
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