Thermonicolet Omnic Software User's Guide 6.1 (PDF) - Charles E ...

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Note If a spectrum has been pasted into the log window, you must turn on Save Log As RTF File in the File options (available through Options in the Edit menu) if you want the image saved with the log. ▲ Opening or closing a log ■ ■ The log is a text file that can be opened by word processing and other compatible programs. You can use such a program to take data from the log to use directly in reports, often with little need to cut and paste information. Before you paste a spectrum into a log, adjust the spectrum’s size by changing the size of the spectral window that contains it. The spectrum will be the same size in the log window as it was in the spectral window. Printing Use Print in the File menu to print spectra in a spectral window, the contents of the log window, or information contained on a tab of Library Manager. When you print spectra contained in a spectral window, they are printed in the same order as they appear on the screen. If you are displaying a spectral region, that region is printed. To specify margin sizes and other printing options, use Options in the Edit menu to set the Print options. Note To print a report, use Preview/Print Report in the Report menu. See “Previewing or printing a report” in the “Report” chapter for details. ▲ Print spectra or a log 1. Use Options in the Edit menu to set the Print options as desired. The changes you make to the Print options will take effect when you print a spectral window (or a report using Preview/Print Report) or when you next add an image to the log window. The display of spectra in a spectral window is not affected by the Print options. See “Print options” in the “Edit” menu for complete information on using the Print options. 2. Display the items you want to print. If you are printing spectra, arrange them in the spectral window exactly as you want them to appear on paper. If you are printing spectra in a spectral window, make sure the window is selected when you are finished arranging the spectra. If you are printing a log, select the log window by clicking anywhere inside it. If you want to print information contained on a tab of Library Manager, display that tab. See “Managing libraries” in the “Analyze” chapter for information on displaying tabs of Library Manager. 66 Thermo Nicolet
3. Make sure the printer is turned on and ready. Note If you are printing a log, it will be printed on the default printer, regardless of which printer is selected in the Print Setup dialog box. ▲ 4. Choose Print from the File menu. The Print dialog box lets you specify items such as the number of pages to print. Set the parameters as desired and then choose OK. (See your Windows documentation for details on using this dialog box.) Setting up the printer Use Printer Setup in the File menu to specify a printer and set the page orientation and other print parameters before you print images or information on paper. See “Printing” for more information. Set up the printer 1. Choose Printer Setup from the File menu. The Print Setup dialog box appears. 2. Select the printer from the list box. You can also specify portrait or landscape page orientation. Note Note If you change the orientation using Printer Setup, the Orientation option in the Print options (available through Options in the Edit menu) will be reset to the new orientation. The page orientation setting in Windows Control Panel or in the printer setup dialog box for other applications is not affected by the setting you make here. See “Specifying how to print spectra” in the “Edit” chapter for more information on the Orientation option. ▲ If you are printing a log, it will be printed on the default printer, regardless of which printer is selected in the Print Setup dialog box. ▲ 3. If you want to set the printer parameters, choose Options. If you don’t want to set the parameters, choose OK. If you choose Options, a dialog box shows the current settings of the printer parameters. This dialog box varies in appearance depending on your printer. See the documentation that came with your printer for information on setting the printer parameters. After you set the printer parameters, choose OK to close the dialog box, and then choose OK to close the Print Setup dialog box. Deleting files Use Delete Files in the File menu to delete spectral data files, configuration files, experiment files, log files and other kinds of files and place them in the Windows Recycle Bin. OMNIC User’s <strong>Guide</strong> 67
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The information in this publication
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Peak area tool.....................
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Checking spectrometer performance a
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Process............................
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Selecting, editing or creating a re
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How to use this manual This manual
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• If you do not have the DS optio
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Note If you have the DS option, you
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Digital signature information in a
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There are several ways to enter the
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Note Some tutorials are available o
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Note If you are using Windows 2000
Page 26 and 27: Panes A pane is an area of the spec
Page 28 and 29: Displaying a list of spectrum title
Page 30 and 31: Displaying a different spectral reg
Page 32 and 33: Copying information to the Clipboar
Page 34 and 35: Note You can select all the display
Page 36 and 37: Next, hold down the Shift key and c
Page 38 and 39: Region tool Some OMNIC commands can
Page 40 and 41: You can position the annotation tex
Page 42 and 43: You can position the annotation by
Page 44 and 45: 2. Click the Annotate button to the
Page 46 and 47: The corrected area is bordered by t
Page 48 and 49: 2. Edit the label text if desired.
Page 50 and 51: Overlaying spectra lets you see sig
Page 52 and 53: When you hide a stacked spectrum, a
Page 54 and 55: If a pane containing a spectrum is
Page 56 and 57: 46 Thermo Nicolet
Page 58 and 59: File Type Extension Comments Spectr
Page 60 and 61: The settings available in the Y Uni
Page 62 and 63: If Put Opened Spectrum In New Windo
Page 64 and 65: 3. If the Save As dialog box appear
Page 66 and 67: 2. Choose Save Group from the File
Page 68 and 69: 2. Locate and select the desired fi
Page 70 and 71: Save a configuration This procedure
Page 72 and 73: A dialog box appears. 2. Type a use
Page 74 and 75: Note The Enable OMNIC Log-In comman
Page 78 and 79: Delete files 1. Choose Delete Files
Page 80 and 81: When you cut a displayed stacked sp
Page 82 and 83: Pasting duplicate images of spectra
Page 84 and 85: Note The options you set using Opti
Page 86 and 87: File Type Initial Spectra Initial E
Page 88 and 89: Normalize the spectra of standards
Page 90 and 91: In the upper-left corner of the dia
Page 92 and 93: Type Annotation Axis Labels Axis Nu
Page 94 and 95: Specifying how to print axes The op
Page 96 and 97: Text Type Annotation Axis Labels Ax
Page 98 and 99: Note If you have turned off Prompt
Page 100 and 101: Setting Smart Purge The Smart Purge
Page 102 and 103: Specifying how to list peaks found
Page 104 and 105: 4. Collect a sample spectrum with n
Page 106 and 107: To specify or do this... The X-axis
Page 108 and 109: Turn on Display All Annotation if y
Page 110 and 111: Item Company Name Spectrum Title Da
Page 112 and 113: Preventing the overwriting of files
Page 114 and 115: State Enabled Disabled Hidden Descr
Page 116 and 117: 6. If you disabled or hid the Save
Page 118 and 119: 5. Specify the size of the toolbar
Page 120 and 121: Note You can create an image for a
Page 122 and 123: The experiment you select also sets
Page 124 and 125: Note The experiment you select also
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Note If you are studying samples th
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When deciding whether to use this f
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Titling the experiment Bench featur
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The peak-to-peak intensity is the s
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• It helps prevent infrared energ
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Specifying the beamsplitter type If
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The parameter checks appear when yo
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The individual checks are described
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Fringes result when back reflection
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A beamsplitter, detector, source or
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Type the desired minimum peak-to-pe
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Setting Boxcar N-B* Weak N-B* Mediu
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As an example, for a standard DTGS
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If you have installed a Smart Acces
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• Install a 32-bit version of OMN
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• To save the settings in the cur
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The positive settings move your vie
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What happens during collection? The
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3. Choose Collect Sample from the C
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Note To store the spectrum on the h
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Viewing the age of the background D
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If Preview Data Collection is turne
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If at any time the system condition
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Undo a display limit change Choose
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To specify this or do this... The n
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To remove the grid from a spectral
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Note You can display annotations ve
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This format is suitable for high re
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Specifying the sampling information
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Stacked spectra Stacking spectra is
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Full Scale brings the highest data
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Match the Y-axis scale of a spectru
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Display spectra vertically offset 1
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Display spectra full scale automati
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Displaying and using a toolbar Use
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Converting spectra to absorbance Us
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The units are described in the next
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The photoacoustic value (PAS) at a
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Micrometers Select Micrometers to c
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4. Choose OK. • If you selected K
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• To change the final format. You
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What is a baseline? A baseline cons
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Important Be careful not to introdu
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The X and Y values of the point app
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8. When you are finished correcting
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Before searching an ATR spectrum ag
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• A spectrum includes the region
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Replacing a spectral region with a
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Subtracting spectra Use Subtract in
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2. Choose Subtract from the Process
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Subtracting a component or contamin
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Note If negative peaks appear in th
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3. Select the desired number of smo
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Converting spectra to their first o
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Multiplying a spectrum by a number
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Symbol Meaning Examples / Divide. A
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• To change the factor using the
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Here is the normalized spectrum: In
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Normalize the scale of spectra 1. S
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Example libraries The following sec
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Click the Print button in the Find
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6. To display or remove the Y-axis
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3. Choose Average from the Process
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Range of Y values versus X value Pe
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4. If you are not using the search
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Using extended search The Extended
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When you perform the search, the ex
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All the QC libraries and library gr
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Set up a spectral search (The proce
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7. Specify the number of found libr
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5. Specify the spectral regions to
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Search a spectral library 1. Use Li
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If you did not use the search exper
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To print the search expert’s comm
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Color-coded titles of the spectrum
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To print the spectrum and functiona
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You can choose Overlay Spectra from
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Working with libraries Click the Li
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Once a library is created, you can
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3. Click the name of the user libra
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A copy of the spectrum is placed in
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• If you are adding more than one
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3. Click the name of the library. T
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9. Choose Search. The search result
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The kinds of information displayed
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2. Click the Create/Edit Structures
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If you want to print the informatio
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When you are ready to start printin
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You can only add the spectrum to a
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3. If you want to reset the data co
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Follow these general steps to creat
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Type Spectrum Comments Spectrum Cus
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3. Specify the item type by selecti
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5. Choose Preview/Print Report from
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4. If the item type is Spectral Win
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The page number of the currently di
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7. Close the Report Template window
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Adding a report to a notebook Use A
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To view a report notebook, use View
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Searching for text Click the Search
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Express dates on this tab in the fo
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5. To search for reports that conta
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Note When windows are tiled, they m
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atmospheric effects suppressing, 94
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status of, 148 time for, 115, 116,
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detector interface kit, 123 detecto
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finding peaks, 235 fingerprint regi
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special criteria for, 246 spectral
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OMNIC Atlµs default directory, 76
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Process options, 90 Protégé spect
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experiment, 114, 146 default direct
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detector, 127 filter for, 139 for c
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displaying, 14, 20, 39, 95 color fo
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text adding to report template, 297
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x X-axis, 14, 17 display limits, 17
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Thermonicolet Omnic Software User's Guide 6.1 (PDF) - Charles E ...

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