13th International Conference on Membrane Computing - MTA Sztaki

M.A. Martínez-del-Amor, I. Pérez-Hurtado, M. García-Quismondo,
L.F. Macías-Ramos, L. Valencia-Cabrera, A. Romero-Jiménez, C. Graciani,
A. Riscos-Núñez, M.A. Colomer, M.J. Pérez-Jiménez
Fig. 8. Data of the year 2008 from: real measurements of the ecosystem, original
simulator in C++, simulator using DNDP and simulator using DCBA.
the speedup achieved by using the different cores, make interesting the search for
more parallel architectures. For the near future work, we will use the massively
parallel architectures inside the graphics cards (GPUs) using CUDA. We will
adapt and scale the DCBA algorithm using the CUDA programming model,
and develop a parallel simulator for GPU based systems.
Acknowledgements
The authors acknowledge the support of “Proyecto de Excelencia con Investigador
de Reconocida Valía” of the “Junta de Andalucía” under grant P08-
TIC04200, and the support of the project TIN2009-13192 of the “Ministerio de
Educación y Ciencia” of Spain, both co-financed by FEDER funds.
References
1. L. Bianco, V. Manca, L. Marchetti, M. Petterlini. Psim: a simulator for
biomolecular dynamics based on P systems, I EEE Congress on Evolutionary
Computation (2007), 883–887.
308