09.09.2014 Views

13th International Conference on Membrane Computing - MTA Sztaki

13th International Conference on Membrane Computing - MTA Sztaki

13th International Conference on Membrane Computing - MTA Sztaki

SHOW MORE
SHOW LESS

Create successful ePaper yourself

Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.

R. Pagliarini, O. Agrigoroaiei, G. Ciobanu, V. Manca<br />

variables generating the observed data. This does not imply that all the cases of<br />

causality can be discovered in this way. Of course, other more complex relati<strong>on</strong>s<br />

can remain hidden or misunderstood. However, when observed phenomena are<br />

produced by big populati<strong>on</strong> dynamics, the methods is statistically reliable. This<br />

is the case of a lot of important biological processes due to the molecule populati<strong>on</strong><br />

interacti<strong>on</strong>s. When causes depend <strong>on</strong> the acti<strong>on</strong>s of single or few molecules,<br />

of course, statistics is out of order.<br />

Acknowledgements<br />

We thank the an<strong>on</strong>ymous reviewers for their helpful comments. The work<br />

of the authors from Iaşi was supported by a grant of the Romanian Nati<strong>on</strong>al<br />

Authority for Scientific Research, CNCS-UEFISCDI, project number PN-II-ID-<br />

PCE-2011-3-0919.<br />

References<br />

1. O. Agrigoroaiei and G. Ciobanu. Rule-based and Object-based Event Structures<br />

for <strong>Membrane</strong> Systems. Journal of Logic and Algebraic Programming, 79(6):295–<br />

303, 2010.<br />

2. O. Agrigoroaiei and G. Ciobanu. Quantitative Causality in <strong>Membrane</strong> Systems.<br />

In Int. C<strong>on</strong>f. <strong>on</strong> <strong>Membrane</strong> <strong>Computing</strong>, pages 62–72, 2011.<br />

3. N. Busi. Causality in membrane systems. In Proceedings of the 8th internati<strong>on</strong>al<br />

c<strong>on</strong>ference <strong>on</strong> <strong>Membrane</strong> computing, WMC’07, pages 160–171, Berlin, Heidelberg,<br />

2007. Springer-Verlag.<br />

4. G. Castellini, A. Franco and R. Pagliarini. Data analysis pipeline from laboratory<br />

to MP models. Natural <strong>Computing</strong>, 10(1):55–76, 2011.<br />

5. G. Ciobanu and D. Lucanu. Events, causality, and c<strong>on</strong>currency in membrane systems.<br />

In Proceedings of the 8th internati<strong>on</strong>al c<strong>on</strong>ference <strong>on</strong> <strong>Membrane</strong> computing,<br />

WMC’07, pages 209–227, Berlin, Heidelberg, 2007. Springer-Verlag.<br />

6. R. A. Fisher. On the Mathematical Foundati<strong>on</strong>s of Theoretical Statistics. Philosophical<br />

Transacti<strong>on</strong>s of the Royal Society of L<strong>on</strong>d<strong>on</strong>. Series A, C<strong>on</strong>taining Papers<br />

of a Mathematical or Physical Character, 222:309–368, 1922.<br />

7. A. Fuente, N. Bing, I. Hoeschele, and P. Mendes. Discovery of meaningful associati<strong>on</strong>s<br />

in genomic data using partial correlati<strong>on</strong> coefficients. Bioinformatics,<br />

20(18):3565–3574, 2004.<br />

8. A. Goldbeter. A Minimal cascade model for the mitotic oscillator involving cyclin<br />

and cdc2 Kinase. PNAS, 88(20):9107–9111, 1991.<br />

9. F. Hynne, S. Danø, and P. G. Sørensen. Full-scale model of glycolysis in saccharomyces<br />

cerevisiae. Biophysical Chemistry, 94(1-2):121 – 163, 2001.<br />

10. B. H. Junker and F. Schreiber. Analysis of Biological Networks (Wiley Series in<br />

Bioinformatics). Wiley-Interscience, 2008.<br />

11. J. H. C. M. Kleijn, M. Koutny, and G. Rozenberg. Towards a petri net semantics for<br />

membrane systems. In Proceedings of the 6th internati<strong>on</strong>al c<strong>on</strong>ference <strong>on</strong> <strong>Membrane</strong><br />

<strong>Computing</strong>, WMC’05, pages 292–309, Berlin, Heidelberg, 2006. Springer-<br />

Verlag.<br />

368

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!