Colletotrichum: complex species or species ... - CBS - KNAW
Colletotrichum: complex species or species ... - CBS - KNAW
Colletotrichum: complex species or species ... - CBS - KNAW
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The <strong>Colletotrichum</strong> gloeosp<strong>or</strong>ioides <strong>species</strong> <strong>complex</strong><br />
1<br />
ICMP 17814 Fragaria USA<br />
0.99<br />
ICMP 17099 Fragaria USA<br />
ICMP 17927 C. fragariae Fragaria USA<br />
1<br />
1 ICMP 18649 C. theobromicola Theobroma Panama<br />
ICMP 18650 Theobroma Panama<br />
0.72 ICMP 17100 Quercus USA<br />
ICMP 18567 Olea Australia<br />
0.99<br />
ICMP 17958 Stylosanthes Australia<br />
0.61<br />
0.64 ICMP 15445 Acca New Zealand<br />
ICMP 17895 Annona Mexico<br />
1 ICMP 17957 C. gloeosp<strong>or</strong>ioides f. stylosanthis Stylosanthes Australia<br />
1 ICMP 18565 Olea Australia<br />
ICMP 18566 Olea Australia<br />
0.88<br />
ICMP 18576 Limonium Israel<br />
1 ICMP 17903 C. xanth<strong>or</strong>rhoeae Xanth<strong>or</strong>rhoea Australia<br />
ICMP 17820 Xanth<strong>or</strong>rhoea Australia<br />
ICMP 10492 C. h<strong>or</strong>ii Diospryos Japan<br />
1<br />
ICMP 17970 Diospryos Japan<br />
0.85<br />
ICMP 17968 Diospryos China<br />
1<br />
C. h<strong>or</strong>ii<br />
ICMP 12951 Diospryos New Zealand<br />
ICMP 12942 Diospryos New Zealand<br />
1 ICMP 18543 Melicytus New Zealand<br />
0.93 ICMP 17324 Kunzea New Zealand<br />
ICMP 18533 Prumnopitys New Zealand<br />
ICMP 18528 Berberis New Zealand<br />
0.97 ICMP 18535 Dacrycarpus New Zealand<br />
0.68 ICMP 18734 Berberis New Zealand<br />
ICMP 18540 Geniostoma New Zealand<br />
0.99 ICMP 18532 Vitex New Zealand<br />
ICMP 17326 Podocarpus New Zealand<br />
0.54 ICMP 18577 Coprosma New Zealand<br />
0.66 ICMP 18536 Coprosma New Zealand<br />
C. aotearoa<br />
0.82 ICMP 18541 Coprosma New Zealand<br />
ICMP 18537 C. aotearoa Coprosma New Zealand<br />
0.66<br />
ICMP 18530 Vitex New Zealand<br />
ICMP 18735 Hedychium New Zealand<br />
0.79 ICMP 18548 Coprosma New Zealand<br />
ICMP 18736 Lonicera New Zealand<br />
1 0.69<br />
ICMP 18748 Ligustrum New Zealand<br />
0.83<br />
0.69 ICMP 18742 Meryta New Zealand<br />
0.53 ICMP 18740 Dysoxylum New Zealand<br />
ICMP 18529 Acmena New Zealand<br />
1 ICMP 4832 C. ti C<strong>or</strong>dyline New Zealand<br />
ICMP 5285 C<strong>or</strong>dyline New Zealand<br />
C. ti<br />
ICMP 12952 Persea New Zealand<br />
1<br />
ICMP 18531 Persea New Zealand<br />
ICMP 12953 Persea New Zealand<br />
ICMP 17915 Coffea Angola<br />
0.96<br />
ICMP 17905 Coffea Cameroon<br />
ICMP 18544 T<strong>or</strong>onia New Zealand<br />
ICMP 17932 Dryandra South Africa<br />
ICMP 17922 Glomerella cingulata var. migrans Hypericum Germany<br />
ICMP 17816 C. kahawae subsp. kahawae Coffea Kenya<br />
1 ICMP 18741 Kunzea New Zealand<br />
C. kahawae<br />
ICMP 18534 Kunzea New Zealand<br />
0.75<br />
ICMP 17931 Dryas Switzerland<br />
ICMP 18539 C. kahawae subsp. ciggaro Olea Australia<br />
ICMP 18728 Miconia Brazil<br />
0.99 ICMP 19122 Glomerella rufomaculans var. vaccinii Vaccinium USA<br />
ICMP 17928 Coffea Kenya<br />
ICMP 17811 Coffea Malawi<br />
1<br />
0.97 ICMP 10643 Glomerella cingulata “f. sp. camelliae” Camellia UK<br />
1 ICMP 18542 Camellia USA<br />
0.99 ICMP 10646 Camellia USA<br />
1 ICMP 18706 Vitis USA<br />
ICMP 18658 C. gloeosp<strong>or</strong>ioides “f. sp. clidemiae”Clidemia USA<br />
ICMP 19120 C. psidii Psidium Italy<br />
ICMP 18579 C. c<strong>or</strong>dylinicola C<strong>or</strong>dyline Thailand<br />
1<br />
ICMP 17904 C. boninense Crinum Japan<br />
ICMP 17920 C. hippeastri Hippeastrum Netherlands<br />
C. theobromicola<br />
C. xanth<strong>or</strong>rhoeae<br />
Glomerella cingulata “f. sp.camelliae”<br />
C. clidemiae<br />
C. psidii<br />
C. c<strong>or</strong>dylinicola<br />
Fig. 1. (Continued).<br />
1.0<br />
parts of the w<strong>or</strong>ld, but has been isolated from other hosts as well,<br />
such as Ficus, Mangifera, Pueraria, and Vitis. Not all of the <strong>species</strong><br />
with a broad host range are found everywhere, f<strong>or</strong> example in New<br />
Zealand C. alienum is commonly associated with cultivated fruits,<br />
whereas <strong>species</strong> such as C. siamense and C. fructicola, common<br />
on these same cultivated fruits in other parts of the w<strong>or</strong>ld, have not<br />
been rep<strong>or</strong>ted from New Zealand.<br />
Taxonomy<br />
Based on results of the multigene concatenated BI phylogenies,<br />
we accept 22 <strong>species</strong> plus one sub<strong>species</strong> within the C.<br />
gloeosp<strong>or</strong>ioides <strong>complex</strong>. Isolates authentic f<strong>or</strong> G. cingulata “f.<br />
sp. camelliae” f<strong>or</strong>m a genetically distinct group, but this is not<br />
f<strong>or</strong>mally named because of doubts over its relationship to C.<br />
camelliae. Based on DNA sequence comparisons, a few other<br />
isolates almost certainly represent additional unnamed <strong>species</strong>.<br />
We do not f<strong>or</strong>mally describe them because most are known from<br />
a single isolate, often stale, with little understanding of either their<br />
m<strong>or</strong>phological <strong>or</strong> biological diversity. In the Musae clade these<br />
include ICMP 18614 and ICMP 18616, both from grape from<br />
Japan, and ICMP 18726 from pawpaw from the Cook Islands,<br />
and in the Kahawae clade ICMP 18699 from chestnut from Japan.<br />
These isolates are not included in the phylogenies in this study,<br />
www.studiesinmycology.<strong>or</strong>g<br />
127
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