Colletotrichum: complex species or species ... - CBS - KNAW

More documents

Recommendations

Info

Cannon et al. 1 1 0.74 C. cuscutae IMI 304802 HT C. fioriniae CBS 128517 HT 0.77 C. limetticola CBS 114.14 ET C. costaricense CBS 330.75 HT 0.65 C. lupini CBS 109225 NT C. tamarilloi CBS 129814 HT C. melonis CBS 159.84 HT C. guajavae IMI 350839 HT 0.59 C. paxtonii IMI 165753 HT C. simmondsii CBS 122122 HT 0.73 C. nymphaeae CBS 515.78 ET C. scovillei CBS 126529 HT 0.53 C. chrysanthemi IMI 364540 §* C. laticiphilum CBS 112989 HT 0.79 C. brisbanense CBS 292.67 HT C. carthami SAPA100011 ET C. indonesiense CBS 127551 HT C. sloanei IMI 364297 HT C. walleri CBS 125472 HT C. acerbum CBS 128530 HT C. johnstonii CBS 128532 HT 1 C. pyricola CBS 128531 HT C. australe CBS 116478 HT 1 C. phormii CBS 118194 ET 1 C. kinghornii CBS 198.35 HT C. salicis CBS 607.94 ET 1 C. rhombiforme CBS 129953 HT C. godetiae CBS 133.44 HT 0.99 C. cosmi CBS 853.73 HT C. acutatum CBS 112996 ET 0.58 C. orchidophilum CBS 632.80 HT C. pseudoacutatum CBS 436.77 HT 0.98 C. rusci CBS 119206 HT C. trichellum CBS 217.64 §* 0.67 0.69 C. graminicola CBS 130836 ET C. navitas CBS 125086 HT C. paspali MAFF 305403 HT 0.56 1 C. jacksonii MAFF 305460 HT 0.99 C. echinochloae MAFF 511473 HT C. hanaui MAFF 305404 HT 0.92 0.58 C. falcatum CBS 147945 NT C. eleusines MAFF 511155 ET 0.90 1 C. eremochloae CBS 129661 HT 0.92 0.84 0.54 C. sublineolum CBS 131301 ET C. miscanthi MAFF 510857 HT C. nicholsonii MAFF 511115 HT C. cereale CBS 129663 ET 0.57 0.72 0.92 C. destructivum CBS 149.34 §* C. higginsianum IMI 349063 §* 0.76 C. tabacum CBS 161.53 §* 1 C. fuscum CBS 130.57 §* C. linicola CBS 172.51 §* G. truncata CBS 127604 §* 0.57 0.93 C. anthrisci CBS 125334 HT 1 C. fructi CBS 346.37 ET 0.89 1 C. dematium CBS 125.25 ET C. lineola CBS 125337 ET 1 C. circinans CBS 221.81 ET C. spinaciae CBS 128.57 §* 0.92 0.99 C. liriopes CBS 119444 HT C. verruculosum IMI 45525 HT 0.62 0.98 0.92 C. lilii CBS 109214 §* C. spaethianum CBS 167.49 ET C. tofieldiae CBS 495.85 §* C. coccodes CBS 369.75 NT 0.70 C. siamense ICMP 18578 HT 0.73 C. gloeosporioides ICMP 17821 ET 0.62 C. aeschynomenes ICMP 17673 HT C. fructicola ICMP 17921 HT C. nupharicola ICMP 18187 HT 0.83 C. musae ICMP 19119 ET C. alatae ICMP 17919 HT 1 C. asianum ICMP 18580 HT C. aenigma ICMP 18608 HT C. alienum ICMP 12071 HT 0.79 C. queenslandicum ICMP 1778 ET C. salsolae ICMP 19051 HT C. tropicale ICMP 18653 HT C. xanthorrhoeae ICMP 17903 HT C. theobromicola ICMP 18649 NT C. aotearoa ICMP 18537 HT 0.86 C. ti ICMP 4832 HT C. clidemiae ICMP 18658 HT 1 C. horii ICMP 10492 NT C. kahawae ICMP 17816 HT C. cordylinicola ICMP 18579 HT C. psidii ICMP 19120 AUT 0.51 0.99 C. brassicicola CBS 101059 HT C. colombiense CBS 129818 HT 0.54 0.50 C. beeveri CBS 128527 HT C. cymbidiicola IMI 347923 HT C. oncidii CBS 129828 HT 0.90 C. boninense CBS 123755 HT 1 C. karstii CGMCC 3.14194 HT C. phyllanthi CBS 175.67 IT 0.88 C. annellatum CBS 129826 HT 0.68 C. petchii CBS 378.94 ET C. torulosum CBS 128544 HT C. novae-zelandiae CBS 128505 HT C. constrictum CBS 128504 HT 1 0.65 0.99 1 C. dacrycarpi CBS 130241 HT 0.90 C. brasiliense CBS 128501 HT 1 1 C. parsonsiae CBS 128525 HT C. hippeastri CBS 125376 HT 1 1 C. truncatum CBS 151.35 ET C. jasminigenum MFLUCC 10 0273 HT C. curcumae IMI 288937 ET C. chlorophyti IMI 103806 HT 1 C. dracaenophilum CBS 118199 HT C. yunnanense CBS 132135 HT C. cliviae CBS 125375 HT C. lindemuthianum CBS 144.31 §* C. orbiculare CBS 514.97 §* Monilochaetes infuscans CBS 869.96 0.3 Fig. 2. Phylogenetic tree derived from a Bayesian analysis of an alignment of ITS (599 bp) sequences, run for 1×10 7 generations with a GTR+I+Γ model of DNA evolution. Species names are followed by culture number, and status of the culture, where HT = ex-holotype, ET = epitype, NT = ex-neotype, IT = ex-isotype, AUT = authentic culture. Sequences from a number of non-validated cultures have been included in order to represent clades that have not yet been subject to revision based on multilocus data. These are indicated by the symbol §*. orchidophilum as sister taxon. The clade, along with a small number of outlying taxa, forms a sister taxon to a combination of the destructivum, graminicola and spaethianum clades and C. coccodes. Two principal subclades may be detected within the acutatum clade, containing 19 and nine species respectively, and C. acutatum sensu stricto is resolved as an outlier of a 202
Colletotrichum – current status and future directions 1 1 C. paxtonii IMI 165753 HT 0.88 C. simmondsii CBS 122122 HT 0.79 C. sloanei IMI 364297 HT C. nymphaeae CBS 515.78 ET 1 C. guajavae IMI 350839 HT C. scovillei CBS 126529 HT 1 C. walleri CBS 125472 HT 0.88 C. cosmi CBS 853.73 HT C. chrysanthemi IMI 364540 §* C. indonesiense CBS 127551 HT C. laticiphilum CBS 112989 HT 1 C. brisbanense CBS 292.67 HT C. carthami SAPA100011 ET 0.96 C. limetticola CBS 114.14 ET C. costaricense CBS 330.75 HT 0.89 0.94 C. lupini CBS 109225 NT acutatum 1 C. tamarilloi CBS 129814 HT 1 C. cuscutae IMI 304802 HT C. melonis CBS 159.84 HT C. fioriniae CBS 128517 HT C. acutatum CBS 112996 ET 1 0.70 C. australe CBS 116478 HT C. phormii CBS 118194 ET 0.79 C. kinghornii CBS 198.35 HT 0.92 1 C. acerbum CBS 128530 HT 1 C. rhombiforme CBS 129953 HT 1 C. salicis CBS 607.94 ET 1 C. johnstonii CBS 128532 HT 1 1 C. pyricola CBS 128531 HT 1 C. godetiae CBS 133.44 HT C. orchidophilum CBS 632.80 HT C. pseudoacutatum CBS 436.77 HT 1 C. rusci CBS 119206 HT C. trichellum CBS 217.64 §* 1 1 C. jacksonii MAFF 305460 HT C. echinochloae MAFF 511473 HT 0.57 C. hanaui MAFF 305404 HT C. falcatum CBS 147945 NT C. eleusines MAFF 511155 ET 1 C. nicholsonii MAFF 511115 HT 1 C. paspali MAFF 305403 HT 1 1 C. graminicola CBS 130836 ET 1 C. navitas CBS 125086 HT 1 1 C. eremochloae CBS 129661 HT graminicola C. sublineoa CBS 131301 ET C. miscanthi MAFF 510857 HT 1 C. cereale CBS 129663 ET 0.64 C. liriopes CBS 119444 HT 1 C. tofieldiae CBS 495.85 §* 0.83 C. verruculosum IMI 45525 HT spaethianum 1 C. lilii CBS 109214 §* 0.66 C. spaethianum CBS 167.49 ET 0.73 1 C. fuscum CBS 130.57 §* 1 0.98 C. higginsianum IMI 349063 §* 1 1 C. tabacum CBS 161.53 §* C. destructivum CBS 149.34 §* destructivum 1 C. linicola CBS 172.51 §* G. truncata CBS 127604 §* 1 C. coccodes CBS 369.75 NT 1 C. dematium CBS 125.25 ET 0.99 C. lineola CBS 125337 ET 1 C. fructi CBS 346.37 ET 0.99 C. anthrisci CBS 125334 HT 1 C. circinans CBS 221.81 ET dematium C. spinaciae CBS 128.57 §* C. chlorophyti IMI 103806 HT 0.81 C. aeschynomenes ICMP 17673 HT C. fructicola ICMP 17921 HT 0.64 C. nupharicola ICMP 18187 HT C. alienum ICMP 12071 HT C. queenslandicum ICMP 1778 ET 0.831 C. salsolae ICMP 19051 HT C. asianum ICMP 18580 HT C. siamense ICMP 18578 HT 0.59 C. aenigma ICMP 18608 HT 0.71 C. tropicale ICMP 18653 HT 0.99 C. musae ICMP 19119 ET gloeosporioides 0.73 C. gloeosporioides ICMP 17821 ET 1 C. alatae ICMP 17919 HT C. xanthorrhoeae ICMP 17903 HT 0.89 0.98 C. clidemiae ICMP 18658 HT 0.98 C. kahawae ICMP 17816 HT 0.89 C. psidii ICMP 19120 AUT 1 0.91 0.99 C. cordylinicola ICMP 18579 HT C. aotearoa ICMP 18537 HT C. ti ICMP 4832 HT 1 C. theobromicola ICMP 18649 NT C. horii ICMP 10492 NT 1 C. torulosum CBS 128544 HT 0.99 C. boninense CBS 123755 HT C. cymbidiicola IMI 347923 HT 1 C. oncidii CBS 129828 HT 0.79 0.85 C. colombiense CBS 129818 HT 0.86 1 C. beeveri CBS 128527 HT 0.58 C. brassicicola CBS 101059 HT 0.76 C. karstii CGMCC 3.14194 HT 1 1 1 C. phyllanthi CBS 175.67 IT boninense C. annellatum CBS 129826 HT C. petchii CBS 378.94 ET 0.95 1 C. novae-zelandiae CBS 128505 HT 1 1 C. brasiliense CBS 128501 HT 0.96 1 C. parsonsiae CBS 128525 HT C. hippeastri CBS 125376 HT 1 HT C. constrictum CBS 128504 C. dacrycarpi CBS 130241 HT 1 1 C. truncatum CBS 151.35 ET C. jasminigenum MFLUCC 10-0273 HT C. curcumae IMI 288937 ET 1 C. dracaenophilum CBS 118199 HT truncatum C. yunnanense CBS 132135 HT 1 C. cliviae CBS 125375 HT C. lindemuthianum CBS 144.31 §* C. orbiculare CBS 514.97 §* orbiculare Monilochaetes infuscans CBS 869.96 0.05 Fig. 3. Phylogenetic tree derived from a Bayesian analysis of a partitioned, concatenated alignment of CHS-1 (251 bp), ACT (305 bp), TUB2 (545 bp) and ITS (599 bp) sequences, run for 1×10 7 generations with a GTR+I+Γ model of DNA evolution for each partition. The major clades recognised in this paper are indicated. Other details as per Fig. 2. clade consisting of the larger of the two subclades along with C. fioriniae. The acutatum clade can be effectively resolved using ITS sequence data alone (Fig. 2). The major subclades are also distinguishable using ITS alone, but the analysis reveals little or no internal structure within the subclades. A comprehensive account of its constituent species can be found as Damm et al. (2012a). www.studiesinmycology.org 203
Page 1:
Studies in Mycology 73 (September 2
Page 4 and 5:
Studies in Mycology The Studies in
Page 6 and 7:
DEDICATION This volume is dedicated
Page 9 and 10:
available online at www.studiesinmy
Page 11 and 12:
The Colletotrichum boninense specie
Page 13 and 14:
Page 15 and 16:
Page 17 and 18:
Page 19 and 20:
Page 21 and 22:
Page 23 and 24:
Page 25 and 26:
Page 27 and 28:
Page 29 and 30:
Page 31 and 32:
Page 33 and 34:
Page 35 and 36:
Page 37 and 38:
Page 39 and 40:
Page 41 and 42:
Page 43 and 44:
Page 45 and 46:
Page 47 and 48:
The Colletotrichum acutatum species
Page 49 and 50:
Page 51 and 52:
Page 53 and 54:
Page 55 and 56:
Page 57 and 58:
Page 59 and 60:
Page 61 and 62:
Page 63 and 64:
Page 65 and 66:
Page 67 and 68:
Page 69 and 70:
Page 71 and 72:
Page 73 and 74:
Page 75 and 76:
Page 77 and 78:
Page 79 and 80:
Page 81 and 82:
Page 83 and 84:
Page 85 and 86:
Page 87 and 88:
Page 89 and 90:
Page 91 and 92:
Page 93 and 94:
Page 95 and 96:
Page 97 and 98:
Page 99 and 100:
Page 101 and 102:
Page 103 and 104:
Page 105 and 106:
Page 107 and 108:
Page 109 and 110:
Page 111 and 112:
Page 113 and 114:
Page 115 and 116:
Page 117 and 118:
Page 119 and 120:
Page 121 and 122:
Page 123 and 124:
Page 125 and 126:
The Colletotrichum gloeosporioides
Page 127 and 128:
Page 129 and 130:
Page 131 and 132:
Page 133 and 134:
Page 135 and 136:
Page 137 and 138:
Page 139 and 140:
Page 141 and 142:
Page 143 and 144:
Page 145 and 146:
Page 147 and 148:
Page 149 and 150:
Page 151 and 152:
Page 153 and 154:
Page 155 and 156:
Page 157 and 158:
Page 159 and 160: The Colletotrichum gloeosporioides
Page 189 and 190: available online at www.studiesinmy
Page 191 and 192: Colletotrichum - current status and
Page 209: Colletotrichum - current status and
Page 223 and 224: Colletotrichum salsolae 164 Colleto
Page 225 and 226: CBS Laboratory Manual Series , Food
Page 227 and 228: CBS Biodiversity Series No. 8: The
show all

Colletotrichum: complex species or species ... - CBS - KNAW

Create successful ePaper yourself

Delete template?

Save as template?