SNOMED CT® Release Format 1 (RF1) Guide - ihtsdo

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234 | SNOMED CT Release Format 1 (RF1) Guide July 2012 CONCEPTID 413577001 95442007 128065004 111029001 111030006 109478007 128533009 93040009 94684003 75076004 109750005 SNOMEDID D3-80064 D3-80506 D4-38016 D4-40131 D4-40139 D4-51098 D4-A0655 D4-A0806 D4-A0824 D4-F1137 D5-15106 FULLY SPECIFIED NAME Arterial thoracic outlet syndrome due to cervical rib (disorder) Peripheral cyanosis (disorder) Congenital partial portal-systemic shunt (disorder) Acrokerato-elastoidosis (disorder) Howel-Evans' syndrome (disorder) Kohlschutter's syndrome (disorder) Micropapilla (disorder) Congenital blepharophimosis (disorder) Microblepharia (disorder) Amyelencephalus (disorder) Abfraction (disorder) DEFINITION Thoracic outlet syndrome, either nerve or vessel compression, due to a cervical rib Disorder characterized by slowing of blood flow to a body region in association with an increase in oxygen extraction from normally saturated arterial blood Congenital portal-systemic shunt in which at least some portal blood perfuses the liver A developmental disorder characterized by keratotic papules of skin of hands and soles with disorganization of dermal elastic fibers that does not appear to be due to trauma or sunlight A form of diffuse palmoplantar keratoderma that occurs between the ages of 5 and 15 and may be associated with the subsequent development of esophageal cancer Ameliogenesis imperfecta, mental retardation, and epileptic seizures Congenital small optic disc with normal visual function A decrease in size of opening of the eye, not due to eyelid fusion, but rather lateral displacement of the inner canthi Congenital abnormal vertical shortness of eyelids Congenital absence of the spinal cord and brain Noncarious lesion, where tooth is fatigued, flexed, and deformed by biomechanical loading of the tooth structure, primarily at the cervical region. These are usually wedge-shaped lesions with sharp-line angles, but sometimes are circular invaginations on occlusal surfaces. © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
CONCEPTID 109778006 109788007 15270002 31201001 109817001 95564001 6595006 84757009 84299009 78141002 76440000 12371008 95692001 95712005 SNOMEDID D5-21244 D5-21613 D5-42004 D5-45211 D5-60862 D5-90416 D6-34730 DA-30000 DA-40020 DA-42100 DA-48100 DA-70170 DA-71725 DA-72546 FULLY SPECIFIED NAME Bednar's aphthae (disorder) Peripheral ossifying fibroma of gingivae (disorder) Obturation obstruction of intestine (disorder) Knight's disease (disorder) Intersigmoid hernia (disorder) Pancreatemphraxis (disorder) Calcinosis (disorder) Epilepsy (disorder) Neuritis (disorder) Erb-Duchenne paralysis (disorder) Equine grass sickness (disorder) Ophthalmia nodosa (disorder) Lipidemia retinalis (disorder) Entropion uveae (disorder) DEFINITION Symmetric excoriation of the hard palate often due to sucking in infants A fibroma of the gums with calcification and possibly ossification Complete obstruction of the intestine due to the presence in the lumen of blocking material, such as tumor , fecalith, gallstone, or foreign body Infection of perianal region of skin following abrasion, which is named for the occurrence in horsemen Hernia of part of the intestinal tract through the intersigmoid recess or fossa Obstruction of the pancreatic duct leading to swelling of the pancreas as a whole Structure with calcium deposition A disorder characterized by recurrent seizures Inflammation of a peripheral and/or cranial nerve A disorder of the superior trunk of the brachial plexus or the fifth and sixth cervical spinal nerves or motor roots, resulting in weakness of proximal upper extremity musculature innervated by these nerve roots Autonomic dysfunction of unknown etiology in horses, with gut paralysis as primary manifestation A granulomatous, inflammatory disorder of the eye; reaction to vegetable or insect hairs An abnormal milky appearance of arteries and veins of retina, for example due to lipids in blood greater than 5%, diabetes mellitus, or leukemia Eversion of the margin of the pupil Formats | 235 © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
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SNOMED CT ® Release Format 1 (RF1)
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Contents | 3 Release Format 1 - Det
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Chapter 1 Preface The purpose of th
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Table 3: Document Types Type Name a
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IHTSDO Glossary (DRAFT) • On line
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Chapter 2 Structure and Content Gui
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Figure 1: Multiple levels of granul
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Table 5: Example: Defining arthriti
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The full definitions of the concept
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Other components (i.e. Relationship
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2.1.2.2.1.3. Linking related Concep
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• Local content requirements that
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Consistent representation is a prer
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Figure 8: Abstract logical model of
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1. As originally stated: : • | Ha
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2.2.1.3.2.3.1. Supertype aspects of
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Figure 11: Example hierarchy with l
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Concept E F G H J K L M Note: Compr
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Concept M List of proximal primitiv
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Table 11: Non-redundant attribute v
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G. | Severe upper limb laceration |
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As a result of this limitation some
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2.2.1.4.3. Historical relationships
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2.2.2.1.1.2. Refinement attribute n
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2.2.2.1.4.3. Use of "unapproved att
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Interim recommendations 1. Wherever
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2.2.2.3.1. Close-to-user expression
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It is important to note that combin
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2.2.2.3.6.1. Example of equivalent
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Figure 25: Alternative expressions
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Figure 27: Possible expressions of
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Figure 28: SCTID Short Format - App
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PartitionId 05 Description A Cross
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SctId 999999990989121104 2.3.2.9. T
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2.3.3.2. Specification for Namespac
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2.3.3.3.1.4. Procedures 2.3.3.3.1.4
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1. Every Concept in an Extension:
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Table 17: Processing Transfers betw
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In May 2008, the HL7 Version 3 Stan
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An expression supports combinations
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digitNonZero= %x31-39 The first cha
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excision of left fallopian tube. No
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This existential restriction is lab
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• In order to generate the OWL ve
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• Though there are many candidate
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2.3.7.2.2.1. Single byte encoding C
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9 0 9 Table 29: The full array for
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else {document.getElementById("out"
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http://www.augustana.ab.ca/~mohrj/a
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version. It seems unwise to prevent
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Table DescDualKey Table ConcDualKey
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The IHTSDO recognizes that, while i
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3.2.2. Release Format 1 - Structure
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3.2.3.2. Core Tables Data - Structu
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Data Fields InitialCapitalStatus De
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3.2.4.1. Subset Mechanism - Structu
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Data Fields ContextId 3.2.4.2.2. Su
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Subset SNOMED CT Top Level Navigati
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• as a combination of codes; •
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Table 41: Cross Mapping Tables Cros
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Table 44: Cross Map Targets Table K
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The History Mechanism is also used
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In addition, the ReferencedId field
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Table Descriptions Descriptions Rel
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Table 49: Relationships depending o
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Table 51: Changes to Relationships
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Table 52: Changes to Relationships
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• The only Relationships that it
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ComponentId ConceptId ReleaseVersio
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A readme.txt file is distributed wi
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Value 6 10 11 Limited Moved elsewhe
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As new concepts are added to SNOMED
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Table 73: DescriptionStatus Values
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3.2.9.2.2.4. InitialCapitalStatus T
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3.2.9.3. relationships tables Each
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3.2.9.3.2.3. ConceptId2 Table 84: -
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An integer value that expresses an
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3.2.9.4.1.2.4. SubsetType Table 95:
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A string that identifies a Context
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3.2.9.4.2.1.2. Data Fields Table 10
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• MemberStatus 3.2.9.4.2.3.1.1. S
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3.2.9.4.2.4.1.3. MemberStatus Table
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3.2.9.4.2.5.2. Data Fields Table 11
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3.2.9.4.2.7.1.1. SubsetId Table 124
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3.2.9.4.2.8.1.3. MemberStatus Table
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3.2.9.4.3. Subset Definition File P
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3.2.9.5.1.2.3. MapSetSchemeId Table
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This discussion of rules is include
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3.2.9.5.1.3.2.3. MapRule Table 151:
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3.2.9.5.1.4.2.3. TargetRule Table 1
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RELAT_NMS = column in the LOINC tab
Page 183 and 184: The value of the SNOMED CT / LOINC
Page 185 and 186: The SNOMED CT Relationships Table e
Page 187 and 188: LOINC Analyte Name(s) DESMETHYLAMIO
Page 189 and 190: LOINC Analyte Name(s) COMPLEMENT IC
Page 191 and 192: The information provided includes d
Page 193 and 194: 3.2.9.6.4.1.2. ReleaseVersion Table
Page 195 and 196: Value 6 7 8 9 10 11 Note: Name Limi
Page 197 and 198: 3.2.9.6.5.1.1. ComponentId Table 17
Page 199 and 200: Release Format 1 is represents a sn
Page 201 and 202: RF1 Descriptions Table Descriptions
Page 203 and 204: Table 177: Concepts Table Use of re
Page 205 and 206: Use of recommended additional indic
Page 207 and 208: Use of recommended additional indic
Page 209 and 210: Table 184: Cross Map Sets Table Use
Page 211 and 212: Keys Partition Size Type Field Name
Page 213 and 214: Table 192: Word Equivalents Table U
Page 215 and 216: 3.2.10. The Stated relationships ta
Page 217 and 218: Figure 41: Overview of Cross Map Sc
Page 219 and 220: Table 197: Cross Maps Sets Table Ma
Page 221 and 222: Table 201: Cross Maps Sets Table Ma
Page 223 and 224: Table 205: Cross Map Sets Table Map
Page 225 and 226: If this approach is followed, there
Page 227 and 228: This approach allows a more consist
Page 229 and 230: 1. A record may contain many record
Page 231 and 232: • Temporally related to the selec
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Page 237 and 238: CONCEPTID 417163006 417746004 12820
Page 267 and 268: 3.2.13. Enumerated values Value 0 1
Page 269 and 270: Table and Field Subsets SubsetType
Page 271 and 272: 3.3. Release Format 2 Update Guide
Page 273 and 274: • The Release Format should minim
Page 275 and 276: 3.3.3.4. Backward compatibility The
Page 277 and 278: 3.3.4.5. Field Ordering Records in
Page 279 and 280: externalised structures such as Ref
Page 281 and 282: ContextId If either the RealmId fie
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descriptions associated with concep
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Figure 45: Illustration of module d
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was inactivated. Each Reference ind
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Finally, add members to the Referen
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3.4.1. File Naming Convention - Ove
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• Test/Beta Release File("xsct",
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In certain cases, an RF1 data file
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VersionDate refers to the official,
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Example: Excluding the Fully Specif
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4.2.1.3. Pre-processing of distribu
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• Reject, highlight or apply othe
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Table 236: Essential concept Identi
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The purpose of this section of the
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Table 240: Example results for a Se
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• For each dual key, add rows to
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• Description104951019 is elimina
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4.4.1.4.1. Avoiding multiple hits o
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Table 248: Relationship Example Con
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• Since the depth of the hierarch
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4.4.2.5. Using navigation Subsets t
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Table 253: Concepts used in the Exa
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SubsetId Mem
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• 302402006 | radius and/or ulna
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Now we have tree nodes and their ch
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Subsets may be used to derive table
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• One Subset can be used as the b
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• A Context Concept Subset only r
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• A Navigation Subset specifies a
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• A RealmID identifies the specia
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4.5. Testing and traversing subtype
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This approach removes the need for
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4.5.5.2.4. Using the transitive clo
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Figure 55: Terminology server provi
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A field in the Component History Ta
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Cross maps table A data table consi
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• References Table Inactive compo
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A field in the Cross Maps Table tha
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A Subset that specifies sets of Nav
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A field in the Concepts Table that
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TargetId A SNOMED CT Identifier tha
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WordText A field in the Word Equiva
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