SNOMED CT® Release Format 1 (RF1) Guide - ihtsdo

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264 | SNOMED CT Release Format 1 (RF1) Guide July 2012 CONCEPTID 26701009 17630002 69079004 4905007 2044003 81036009 36364006 43671000 56190005 86588008 24736005 26386000 SNOMEDID T-A9861 T-A9862 T-A9864 T-A9866 T-A9867 T-A9868 T-A9869 T-A986A T-AA003 T-AA008 T-AA00B T-AA079 FULLY SPECIFIED NAME Structure of pelvic ganglia (body structure) Medial rectal plexus (body structure) Prostatic sympathetic plexus (body structure) Structure of uterovaginal plexus (body structure) Structure of vaginal nerves (body structure) Structure of vesical plexus (body structure) Structure of cavernous nerves of penis (body structure) Structure of cavernous nerves of clitoris (body structure) Structure of external axis of eyeball (body structure) Structure of muscular fascia of eyeball (body structure) Structure of soft tissues of orbit (body structure) Vitreous cavity structure (body structure) DEFINITION Sympathetic and parasympathetic ganglia within pelvic plexi A subdivision of inferior hypogastric plexus, maybe derived from it, that supplies nerves to the rectum Autonomic plexus that runs through the capsule of the prostate and is derived from the inferior hypogastric plexus, and supplies the cavernous nerves of the erectile tissue of penis Autonomic plexus with ganglia derived from inferior hypogastric plexus, that supplies uterus, vagina, ovary, erectile tissue of vestibule, and urethra Nerves running from uterovaginal plexus to vagina that are both sympathetic and parasympathetic An autonomic plexus derived from inferior hypogastric plexus to supply sympathetic nerve fibers to urinary bladder, ureter, ductus deferens, and seminal vesicle Two nerves that supply sympathetic and parasympathetic innervation to vascular structures of corpus cavernosum, stimulating erection; derived from prostatic plexus Nerves that supply sympathetic and parasympathetic innervation to erectile tissue of clitoris; derived from uterovaginal plexus A line segment connecting anterior pole of cornea to posterior pole of sclera Fascia enclosing the extrocular muscles Soft tissues enclosed within orbital region The eye cavity that contains the vitreous © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
CONCEPTID 47538007 19359003 30110007 76729009 27941003 31808004 65690001 11899006 113343008 118760003 71905009 122861001 122498008 SNOMEDID T-AA081 T-AA083 T-AA084 T-AA100 T-AA101 T-C4310 T-C4340 T-C4365 T-D0060 T-D0066 T-D1209 T-D1217 T-D1219 FULLY SPECIFIED NAME Vitreous body structure (body structure) Hyaloid canal structure (body structure) Structure of hyaloid fossa (body structure) Fibrous tunic of eye structure (body structure) Structure of anulus tendineus communis (body structure) Entire intrapulmonary lymph node (body structure) Structure of paratracheal lymph node (body structure) Structure of esophageal lymph node (body structure) Body organ structure (body structure) Entire viscus (body structure) Infrapalpebral fold structure (body structure) Sublingual space (body structure) Submaxillary space structure (body structure) DEFINITION Composite structure of hyaluronic acid gel within a stromal network of collagen fibrils A canal that runs from optic disc to lens that contains the hyaloid artery in the fetus A depression of the anterior surface of the vitreous body where the lens fits Outer coating of eyeball; has parts cornea and sclera Orbital structure; a fibrous ring that is the origin of the rectus muscles Lymph node within the lung Lymph node along the trachea; may be in either the thorax or the neck Lymph node along the esophagus , may be in either the mediastinum or the neck An anatomical structure that consists of the maximal set of organ parts so connected to one another that together they constitute a self-contained unit of macroscopic anatomy, distinct both morphologically and functionally from other such units. Together with other organs, an organ constitutes an organ system or a body part. An organ is divisible into organ parts but not organs (examples: femur, biceps, liver, heart, aorta, sciatic nerve, ovary). A large organ in the thorax, abdomen, or pelvis The sulcus (furrow) below the lower eyelid Formats | 265 A potential space in the floor of the mouth; the part of the submandibular space above the mylohyoid muscle A potential space of the floor of the mouth; part of the submandibular space below the mylohyoid muscle © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
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SNOMED CT ® Release Format 1 (RF1)
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Contents | 3 Release Format 1 - Det
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Chapter 1 Preface The purpose of th
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Table 3: Document Types Type Name a
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IHTSDO Glossary (DRAFT) • On line
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Chapter 2 Structure and Content Gui
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Figure 1: Multiple levels of granul
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Table 5: Example: Defining arthriti
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The full definitions of the concept
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Other components (i.e. Relationship
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2.1.2.2.1.3. Linking related Concep
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• Local content requirements that
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Consistent representation is a prer
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Figure 8: Abstract logical model of
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1. As originally stated: : • | Ha
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2.2.1.3.2.3.1. Supertype aspects of
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Figure 11: Example hierarchy with l
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Concept E F G H J K L M Note: Compr
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Concept M List of proximal primitiv
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Table 11: Non-redundant attribute v
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G. | Severe upper limb laceration |
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As a result of this limitation some
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2.2.1.4.3. Historical relationships
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2.2.2.1.1.2. Refinement attribute n
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2.2.2.1.4.3. Use of "unapproved att
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Interim recommendations 1. Wherever
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2.2.2.3.1. Close-to-user expression
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It is important to note that combin
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2.2.2.3.6.1. Example of equivalent
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Figure 25: Alternative expressions
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Figure 27: Possible expressions of
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Figure 28: SCTID Short Format - App
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PartitionId 05 Description A Cross
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SctId 999999990989121104 2.3.2.9. T
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2.3.3.2. Specification for Namespac
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2.3.3.3.1.4. Procedures 2.3.3.3.1.4
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1. Every Concept in an Extension:
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Table 17: Processing Transfers betw
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In May 2008, the HL7 Version 3 Stan
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An expression supports combinations
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digitNonZero= %x31-39 The first cha
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excision of left fallopian tube. No
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This existential restriction is lab
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• In order to generate the OWL ve
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• Though there are many candidate
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2.3.7.2.2.1. Single byte encoding C
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9 0 9 Table 29: The full array for
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else {document.getElementById("out"
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http://www.augustana.ab.ca/~mohrj/a
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version. It seems unwise to prevent
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Table DescDualKey Table ConcDualKey
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The IHTSDO recognizes that, while i
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3.2.2. Release Format 1 - Structure
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3.2.3.2. Core Tables Data - Structu
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Data Fields InitialCapitalStatus De
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3.2.4.1. Subset Mechanism - Structu
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Data Fields ContextId 3.2.4.2.2. Su
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Subset SNOMED CT Top Level Navigati
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• as a combination of codes; •
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Table 41: Cross Mapping Tables Cros
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Table 44: Cross Map Targets Table K
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The History Mechanism is also used
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In addition, the ReferencedId field
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Table Descriptions Descriptions Rel
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Table 49: Relationships depending o
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Table 51: Changes to Relationships
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Table 52: Changes to Relationships
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• The only Relationships that it
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ComponentId ConceptId ReleaseVersio
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A readme.txt file is distributed wi
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Value 6 10 11 Limited Moved elsewhe
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As new concepts are added to SNOMED
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Table 73: DescriptionStatus Values
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3.2.9.2.2.4. InitialCapitalStatus T
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3.2.9.3. relationships tables Each
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3.2.9.3.2.3. ConceptId2 Table 84: -
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An integer value that expresses an
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3.2.9.4.1.2.4. SubsetType Table 95:
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A string that identifies a Context
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3.2.9.4.2.1.2. Data Fields Table 10
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• MemberStatus 3.2.9.4.2.3.1.1. S
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3.2.9.4.2.4.1.3. MemberStatus Table
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3.2.9.4.2.5.2. Data Fields Table 11
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3.2.9.4.2.7.1.1. SubsetId Table 124
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3.2.9.4.2.8.1.3. MemberStatus Table
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3.2.9.4.3. Subset Definition File P
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3.2.9.5.1.2.3. MapSetSchemeId Table
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This discussion of rules is include
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3.2.9.5.1.3.2.3. MapRule Table 151:
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3.2.9.5.1.4.2.3. TargetRule Table 1
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RELAT_NMS = column in the LOINC tab
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The value of the SNOMED CT / LOINC
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The SNOMED CT Relationships Table e
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LOINC Analyte Name(s) DESMETHYLAMIO
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LOINC Analyte Name(s) COMPLEMENT IC
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The information provided includes d
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3.2.9.6.4.1.2. ReleaseVersion Table
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Value 6 7 8 9 10 11 Note: Name Limi
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3.2.9.6.5.1.1. ComponentId Table 17
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Release Format 1 is represents a sn
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RF1 Descriptions Table Descriptions
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Table 177: Concepts Table Use of re
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Use of recommended additional indic
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Use of recommended additional indic
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Table 184: Cross Map Sets Table Use
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Keys Partition Size Type Field Name
Page 213 and 214: Table 192: Word Equivalents Table U
Page 215 and 216: 3.2.10. The Stated relationships ta
Page 217 and 218: Figure 41: Overview of Cross Map Sc
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Page 221 and 222: Table 201: Cross Maps Sets Table Ma
Page 223 and 224: Table 205: Cross Map Sets Table Map
Page 225 and 226: If this approach is followed, there
Page 227 and 228: This approach allows a more consist
Page 229 and 230: 1. A record may contain many record
Page 231 and 232: • Temporally related to the selec
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Page 263: CONCEPTID 53224005 4150005 74636004
Page 267 and 268: 3.2.13. Enumerated values Value 0 1
Page 269 and 270: Table and Field Subsets SubsetType
Page 271 and 272: 3.3. Release Format 2 Update Guide
Page 273 and 274: • The Release Format should minim
Page 275 and 276: 3.3.3.4. Backward compatibility The
Page 277 and 278: 3.3.4.5. Field Ordering Records in
Page 279 and 280: externalised structures such as Ref
Page 281 and 282: ContextId If either the RealmId fie
Page 283 and 284: eplaced by more descriptive ones if
Page 285 and 286: descriptions associated with concep
Page 287 and 288: Figure 45: Illustration of module d
Page 289 and 290: was inactivated. Each Reference ind
Page 291 and 292: Finally, add members to the Referen
Page 293 and 294: 3.4.1. File Naming Convention - Ove
Page 295 and 296: • Test/Beta Release File("xsct",
Page 297 and 298: In certain cases, an RF1 data file
Page 299 and 300: VersionDate refers to the official,
Page 301 and 302: Example: Excluding the Fully Specif
Page 303 and 304: 4.2.1.3. Pre-processing of distribu
Page 305 and 306: • Reject, highlight or apply othe
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Page 309 and 310: The purpose of this section of the
Page 311 and 312: Table 240: Example results for a Se
Page 313 and 314: • For each dual key, add rows to
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• Description104951019 is elimina
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4.4.1.4.1. Avoiding multiple hits o
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Table 248: Relationship Example Con
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• Since the depth of the hierarch
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4.4.2.5. Using navigation Subsets t
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Table 253: Concepts used in the Exa
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SubsetId Mem
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• 302402006 | radius and/or ulna
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Now we have tree nodes and their ch
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Subsets may be used to derive table
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• One Subset can be used as the b
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• A Context Concept Subset only r
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• A Navigation Subset specifies a
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• A RealmID identifies the specia
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4.5. Testing and traversing subtype
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This approach removes the need for
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4.5.5.2.4. Using the transitive clo
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Figure 55: Terminology server provi
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A field in the Component History Ta
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Cross maps table A data table consi
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• References Table Inactive compo
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A field in the Cross Maps Table tha
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A Subset that specifies sets of Nav
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A field in the Concepts Table that
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TargetId A SNOMED CT Identifier tha
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WordText A field in the Word Equiva
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