SNOMED CT® Release Format 1 (RF1) Guide - ihtsdo

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260 | SNOMED CT Release Format 1 (RF1) Guide July 2012 CONCEPTID 6553002 60962000 65289004 33415007 3377004 81040000 128261004 69105007 38809004 91539005 27706005 122972007 128553008 51289009 122865005 SNOMEDID T-21370 T-21380 T-21390 T-21391 T-21420 T-44000 T-44004 T-45010 T-48300 T-48501 T-48502 T-48581 T-49215 T-50100 T-50101 FULLY SPECIFIED NAME Inferior nasal turbinate structure (body structure) Middle nasal turbinate structure (body structure) Superior nasal turbinate structure (body structure) Supreme nasal turbinate structure (body structure) Structure of agger nasi (body structure) Pulmonary artery structure (body structure) Mediastinal pulmonary artery (body structure) Carotid artery structure (body structure) Structure of vein of thorax (body structure) Structure of right pulmonary vein (body structure) Structure of left pulmonary vein (body structure) Pulmonary venous structure (body structure) Structure of antecubital vein (body structure) Digestive tract structure (body structure) Gastrointestinal tract structure (body structure) DEFINITION Shell-shaped structure of lateral inferior nasal cavity, including bone and covering mucous membrane Shell-shaped structure of lateral middle nasal cavity, including bone and covering mucous membrane Shell-shaped structure of lateral superior nasal cavity, including bone and covering mucous membrane Shell-shaped structure of lateral nasal cavity above the superior nasal turbinate, including bone and covering mucous membrane Ridge on the lateral internal nasal wall due to the ethmoidal crest of the maxilla Includes pulmonary trunk, left and right main pulmonary arteries, and all their branches Includes pulmonary trunk and left and right main pulmonary arteries One of the common carotid, internal carotid, or external carotid arteries Vein located within the thorax One of the great vessels draining venous blood from the right lung One of the great vessels draining venous blood from the left lung Any vein draining the lungs, including pulmonary veins proper and their tributaries A vein located in the antecubital fossa Entire digestive tract including mouth,esophagus , stomach, and intestines Esophagus , stomach, small intestine, and large intestine together as a single entity © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
CONCEPTID 62834003 5668004 34810001 71617008 47975008 47975008 3100007 11326003 38954004 68028003 118652008 3789000 128180007 122489005 49549006 SNOMEDID T-50110 T-50120 T-51010 T-51020 T-53130 T-53130 T-54026 T-54061 T-545A1 T-56500 T-58049 T-58140 T-59261 T-70001 T-A0050 FULLY SPECIFIED NAME Upper gastrointestinal tract structure (body structure) Lower gastrointestinal tract structure (body structure) Structure of vestibule of mouth (body structure) Structure of oral cavity proper (body structure) Structure of root of tongue (body structure) Structure of root of tongue (body structure) Clinical crown of tooth (body structure) Structure of coronal pulp of tooth (body structure) Carnassial tooth structure (body structure) Crop (body structure) Crypt of Lieberkühn (body structure) Enteroendocrine cell (cell) Pelvic appendix (body structure) Urinary system structure (body structure) Visual system structure (body structure) DEFINITION Esophagus , stomach, and duodenum Jejunum, ileum, colon, rectum, and anal canal The part of the oral cavity external to gums and teeth and internal to cheeks and lips The part of the oral cavity internal to the teeth and bounded posteriorly by the palatoglossal arch The part of the tongue that is on the floor of the mouth, and is not covered by mucous membrane The pharyngeal part of the tongue, forming the anterior wall of the oropharynx Portion of tooth exposed above gums, the part above the clinical root Part of the pulp of tooth that is within the crown portion of the pulp cavity Tooth adapted to shear flesh Dilated part of esophagus for food storage in birds Denotes the pits or crypts, but not the glands that lie beneath them Endocrine cell of the gut Appendix which is oriented posteriorly and inferiorly in the pelvic cavity Organs of urine formation and secretion Formats | 261 The eye, ocular adnexa, afferent visual pathways, efferent visual pathways, and pupil innervation pathways © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
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SNOMED CT ® Release Format 1 (RF1)
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Contents | 3 Release Format 1 - Det
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Chapter 1 Preface The purpose of th
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Table 3: Document Types Type Name a
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IHTSDO Glossary (DRAFT) • On line
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Chapter 2 Structure and Content Gui
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Figure 1: Multiple levels of granul
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Table 5: Example: Defining arthriti
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The full definitions of the concept
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Other components (i.e. Relationship
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2.1.2.2.1.3. Linking related Concep
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• Local content requirements that
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Consistent representation is a prer
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Figure 8: Abstract logical model of
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1. As originally stated: : • | Ha
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2.2.1.3.2.3.1. Supertype aspects of
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Figure 11: Example hierarchy with l
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Concept E F G H J K L M Note: Compr
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Concept M List of proximal primitiv
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Table 11: Non-redundant attribute v
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G. | Severe upper limb laceration |
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As a result of this limitation some
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2.2.1.4.3. Historical relationships
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2.2.2.1.1.2. Refinement attribute n
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2.2.2.1.4.3. Use of "unapproved att
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Interim recommendations 1. Wherever
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2.2.2.3.1. Close-to-user expression
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It is important to note that combin
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2.2.2.3.6.1. Example of equivalent
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Figure 25: Alternative expressions
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Figure 27: Possible expressions of
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Figure 28: SCTID Short Format - App
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PartitionId 05 Description A Cross
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SctId 999999990989121104 2.3.2.9. T
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2.3.3.2. Specification for Namespac
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2.3.3.3.1.4. Procedures 2.3.3.3.1.4
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1. Every Concept in an Extension:
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Table 17: Processing Transfers betw
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In May 2008, the HL7 Version 3 Stan
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An expression supports combinations
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digitNonZero= %x31-39 The first cha
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excision of left fallopian tube. No
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This existential restriction is lab
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• In order to generate the OWL ve
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• Though there are many candidate
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2.3.7.2.2.1. Single byte encoding C
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9 0 9 Table 29: The full array for
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else {document.getElementById("out"
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http://www.augustana.ab.ca/~mohrj/a
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version. It seems unwise to prevent
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Table DescDualKey Table ConcDualKey
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The IHTSDO recognizes that, while i
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3.2.2. Release Format 1 - Structure
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3.2.3.2. Core Tables Data - Structu
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Data Fields InitialCapitalStatus De
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3.2.4.1. Subset Mechanism - Structu
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Data Fields ContextId 3.2.4.2.2. Su
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Subset SNOMED CT Top Level Navigati
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• as a combination of codes; •
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Table 41: Cross Mapping Tables Cros
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Table 44: Cross Map Targets Table K
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The History Mechanism is also used
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In addition, the ReferencedId field
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Table Descriptions Descriptions Rel
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Table 49: Relationships depending o
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Table 51: Changes to Relationships
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Table 52: Changes to Relationships
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• The only Relationships that it
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ComponentId ConceptId ReleaseVersio
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A readme.txt file is distributed wi
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Value 6 10 11 Limited Moved elsewhe
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As new concepts are added to SNOMED
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Table 73: DescriptionStatus Values
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3.2.9.2.2.4. InitialCapitalStatus T
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3.2.9.3. relationships tables Each
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3.2.9.3.2.3. ConceptId2 Table 84: -
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An integer value that expresses an
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3.2.9.4.1.2.4. SubsetType Table 95:
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A string that identifies a Context
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3.2.9.4.2.1.2. Data Fields Table 10
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• MemberStatus 3.2.9.4.2.3.1.1. S
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3.2.9.4.2.4.1.3. MemberStatus Table
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3.2.9.4.2.5.2. Data Fields Table 11
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3.2.9.4.2.7.1.1. SubsetId Table 124
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3.2.9.4.2.8.1.3. MemberStatus Table
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3.2.9.4.3. Subset Definition File P
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3.2.9.5.1.2.3. MapSetSchemeId Table
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This discussion of rules is include
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3.2.9.5.1.3.2.3. MapRule Table 151:
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3.2.9.5.1.4.2.3. TargetRule Table 1
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RELAT_NMS = column in the LOINC tab
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The value of the SNOMED CT / LOINC
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The SNOMED CT Relationships Table e
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LOINC Analyte Name(s) DESMETHYLAMIO
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LOINC Analyte Name(s) COMPLEMENT IC
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The information provided includes d
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3.2.9.6.4.1.2. ReleaseVersion Table
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Value 6 7 8 9 10 11 Note: Name Limi
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3.2.9.6.5.1.1. ComponentId Table 17
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Release Format 1 is represents a sn
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RF1 Descriptions Table Descriptions
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Table 177: Concepts Table Use of re
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Use of recommended additional indic
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Use of recommended additional indic
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Page 211 and 212: Keys Partition Size Type Field Name
Page 213 and 214: Table 192: Word Equivalents Table U
Page 215 and 216: 3.2.10. The Stated relationships ta
Page 217 and 218: Figure 41: Overview of Cross Map Sc
Page 219 and 220: Table 197: Cross Maps Sets Table Ma
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Page 223 and 224: Table 205: Cross Map Sets Table Map
Page 225 and 226: If this approach is followed, there
Page 227 and 228: This approach allows a more consist
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Page 231 and 232: • Temporally related to the selec
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Page 259: CONCEPTID 255496004 255499006 24646
Page 267 and 268: 3.2.13. Enumerated values Value 0 1
Page 269 and 270: Table and Field Subsets SubsetType
Page 271 and 272: 3.3. Release Format 2 Update Guide
Page 273 and 274: • The Release Format should minim
Page 275 and 276: 3.3.3.4. Backward compatibility The
Page 277 and 278: 3.3.4.5. Field Ordering Records in
Page 279 and 280: externalised structures such as Ref
Page 281 and 282: ContextId If either the RealmId fie
Page 283 and 284: eplaced by more descriptive ones if
Page 285 and 286: descriptions associated with concep
Page 287 and 288: Figure 45: Illustration of module d
Page 289 and 290: was inactivated. Each Reference ind
Page 291 and 292: Finally, add members to the Referen
Page 293 and 294: 3.4.1. File Naming Convention - Ove
Page 295 and 296: • Test/Beta Release File("xsct",
Page 297 and 298: In certain cases, an RF1 data file
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Page 301 and 302: Example: Excluding the Fully Specif
Page 303 and 304: 4.2.1.3. Pre-processing of distribu
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Table 240: Example results for a Se
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• For each dual key, add rows to
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• Description104951019 is elimina
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4.4.1.4.1. Avoiding multiple hits o
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Table 248: Relationship Example Con
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• Since the depth of the hierarch
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4.4.2.5. Using navigation Subsets t
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Table 253: Concepts used in the Exa
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SubsetId Mem
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• 302402006 | radius and/or ulna
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Now we have tree nodes and their ch
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Subsets may be used to derive table
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• One Subset can be used as the b
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• A Context Concept Subset only r
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• A Navigation Subset specifies a
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• A RealmID identifies the specia
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4.5. Testing and traversing subtype
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This approach removes the need for
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4.5.5.2.4. Using the transitive clo
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Figure 55: Terminology server provi
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A field in the Component History Ta
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Cross maps table A data table consi
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• References Table Inactive compo
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A field in the Cross Maps Table tha
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A Subset that specifies sets of Nav
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A field in the Concepts Table that
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TargetId A SNOMED CT Identifier tha
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WordText A field in the Word Equiva
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