SNOMED CT® Release Format 1 (RF1) Guide - ihtsdo

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236 | SNOMED CT Release Format 1 (RF1) Guide July 2012 CONCEPTID 53889007 44248001 95837007 127062003 64779008 86075001 128105004 128115005 61653009 123976001 19168005 127326005 127346000 SNOMEDID DA-73540 DA-78238 DC-10190 DC-38001 DC-60000 DC-63000 DC-64101 DC-64211 DD-12432 DE-00004 DE-01200 DF-000D3 DF-000F9 FULLY SPECIFIED NAME Nuclear cataract (disorder) Raymond-Cestan syndrome (disorder) Central cyanosis (disorder) Erythrocytosis (disorder) Blood coagulation disorder (disorder) Coagulation factor deficiency syndrome (disorder) Von Willebrand disorder (disorder) Pseudo von Willebrand disease (disorder) Bennett's fracture (disorder) Post-infectious disorder (disorder) Nosocomial infectious disease (disorder) Non-human disorder (disorder) Neurologic disorder of eye movements (disorder) DEFINITION A cataract involving the nucleus of the lens Abducent nerve paralysis with contralateral hemiparesis A form of cyanosis that occurs when there is a decrease in oxygen saturation in the arterial blood, usually with an SaO2 of below 75% Peripheral blood red cell count above the normal range Disorders involving the elements of blood coagulation, including platelets, coagulation factors and inhibitors, and the fibrinolytic system Includes both quantitative and qualitative disorders of procoagulants Includes true von Willebrand disease with mutation at the VWF locus, as well as mimicking disorders with other mutations (pseudo VWD) and acquired von Willebrand syndrome Any inherited disorder mimicking von Willebrand disease but lacking mutation at the VWF locus Fracture and dislocation of the first metacarpal and the carpal-metacarpal joint A disorder that follows infection but is distinct from the infection itself and its usual manifestations Infection associated with hospitalization , not present or incubating prior to admission, but generally occurring more than 72 hours after admission Disorders which occur in animals but not in man Disorders characterized by eye movement abnormalities that are the result of brain, cranial nerve, or neuromuscular junction dysfunction © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
CONCEPTID 417163006 417746004 128207002 62014003 30623001 78064003 77329001 3791008 11421009 119251002 76777009 24184005 12763006 SNOMEDID DF-00776 DF-00777 DF-00833 DF-10010 F-16340 F-20000 F-20160 F-20370 F-23550 F-24432 F-25170 F-31003 F-31004 FULLY SPECIFIED NAME Traumatic AND/OR non-traumatic injury (disorder) Traumatic injury (disorder) Giant axonal neuropathy (disorder) Adverse reaction to drug (disorder) Catch (finding) Respiratory function (observable entity) Mouth breathing (finding) Bohr effect, function (observable entity) Fremitus (finding) Reverse sneezing (finding) Artificial respiration by electrophrenic stimulation (procedure) Finding of increased blood pressure (finding) Finding of decreased blood pressure (finding) DEFINITION Disorder resulting from physical damage to the body Disorder resulting from physical damage to the body An autosomal recessive condition characterized by progressive degeneration of the central and peripheral nervous system with enlargement of axons All noxious and unintended responses to a medicinal product related to any dose should be considered adverse drug reactions (from US FDA "Guideline for Industry, Clinical Safety Data Management: Definitions and Standards for Expedited Reporting"). A sudden pain, usually sharp, occurring during movement, or exacerbated by movement, and prompting cessation of movement Any function involved in the exchange of oxygen and carbon dioxide between the atmosphere and the cells of the body Habitual breathing through the mouth, usually associated with obstruction of nasal passages Right shift of the hemoglobin oxygen dissociation curve due to lower pH with increased carbon dioxide Vibration felt on the chest wall, either by examiner or subjective An inhalation reflex stimulated by an irritation of the mucous membrane of the nose Procedure that applies electrical stimulation to the phrenic nerve to achieve ventilation A finding of increased blood pressure; not necessarily hypertensive disorder Formats | 237 A finding of decreased blood pressure; not necessarily hypotensive disorder © 2002-2012 International Health Terminology Standards Development Organisation CVR #: 30363434
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SNOMED CT ® Release Format 1 (RF1)
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Contents | 3 Release Format 1 - Det
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Chapter 1 Preface The purpose of th
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Table 3: Document Types Type Name a
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IHTSDO Glossary (DRAFT) • On line
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Chapter 2 Structure and Content Gui
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Figure 1: Multiple levels of granul
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Table 5: Example: Defining arthriti
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The full definitions of the concept
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Other components (i.e. Relationship
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2.1.2.2.1.3. Linking related Concep
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• Local content requirements that
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Consistent representation is a prer
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Figure 8: Abstract logical model of
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1. As originally stated: : • | Ha
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2.2.1.3.2.3.1. Supertype aspects of
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Figure 11: Example hierarchy with l
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Concept E F G H J K L M Note: Compr
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Concept M List of proximal primitiv
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Table 11: Non-redundant attribute v
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G. | Severe upper limb laceration |
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As a result of this limitation some
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2.2.1.4.3. Historical relationships
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2.2.2.1.1.2. Refinement attribute n
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2.2.2.1.4.3. Use of "unapproved att
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Interim recommendations 1. Wherever
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2.2.2.3.1. Close-to-user expression
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It is important to note that combin
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2.2.2.3.6.1. Example of equivalent
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Figure 25: Alternative expressions
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Figure 27: Possible expressions of
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Figure 28: SCTID Short Format - App
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PartitionId 05 Description A Cross
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SctId 999999990989121104 2.3.2.9. T
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2.3.3.2. Specification for Namespac
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2.3.3.3.1.4. Procedures 2.3.3.3.1.4
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1. Every Concept in an Extension:
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Table 17: Processing Transfers betw
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In May 2008, the HL7 Version 3 Stan
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An expression supports combinations
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digitNonZero= %x31-39 The first cha
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excision of left fallopian tube. No
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This existential restriction is lab
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• In order to generate the OWL ve
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• Though there are many candidate
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2.3.7.2.2.1. Single byte encoding C
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9 0 9 Table 29: The full array for
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else {document.getElementById("out"
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http://www.augustana.ab.ca/~mohrj/a
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version. It seems unwise to prevent
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Table DescDualKey Table ConcDualKey
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The IHTSDO recognizes that, while i
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3.2.2. Release Format 1 - Structure
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3.2.3.2. Core Tables Data - Structu
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Data Fields InitialCapitalStatus De
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3.2.4.1. Subset Mechanism - Structu
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Data Fields ContextId 3.2.4.2.2. Su
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Subset SNOMED CT Top Level Navigati
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• as a combination of codes; •
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Table 41: Cross Mapping Tables Cros
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Table 44: Cross Map Targets Table K
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The History Mechanism is also used
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In addition, the ReferencedId field
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Table Descriptions Descriptions Rel
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Table 49: Relationships depending o
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Table 51: Changes to Relationships
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Table 52: Changes to Relationships
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• The only Relationships that it
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ComponentId ConceptId ReleaseVersio
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A readme.txt file is distributed wi
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Value 6 10 11 Limited Moved elsewhe
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As new concepts are added to SNOMED
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Table 73: DescriptionStatus Values
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3.2.9.2.2.4. InitialCapitalStatus T
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3.2.9.3. relationships tables Each
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3.2.9.3.2.3. ConceptId2 Table 84: -
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An integer value that expresses an
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3.2.9.4.1.2.4. SubsetType Table 95:
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A string that identifies a Context
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3.2.9.4.2.1.2. Data Fields Table 10
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• MemberStatus 3.2.9.4.2.3.1.1. S
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3.2.9.4.2.4.1.3. MemberStatus Table
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3.2.9.4.2.5.2. Data Fields Table 11
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3.2.9.4.2.7.1.1. SubsetId Table 124
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3.2.9.4.2.8.1.3. MemberStatus Table
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3.2.9.4.3. Subset Definition File P
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3.2.9.5.1.2.3. MapSetSchemeId Table
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This discussion of rules is include
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3.2.9.5.1.3.2.3. MapRule Table 151:
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3.2.9.5.1.4.2.3. TargetRule Table 1
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RELAT_NMS = column in the LOINC tab
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The value of the SNOMED CT / LOINC
Page 185 and 186: The SNOMED CT Relationships Table e
Page 187 and 188: LOINC Analyte Name(s) DESMETHYLAMIO
Page 189 and 190: LOINC Analyte Name(s) COMPLEMENT IC
Page 191 and 192: The information provided includes d
Page 193 and 194: 3.2.9.6.4.1.2. ReleaseVersion Table
Page 195 and 196: Value 6 7 8 9 10 11 Note: Name Limi
Page 197 and 198: 3.2.9.6.5.1.1. ComponentId Table 17
Page 199 and 200: Release Format 1 is represents a sn
Page 201 and 202: RF1 Descriptions Table Descriptions
Page 203 and 204: Table 177: Concepts Table Use of re
Page 205 and 206: Use of recommended additional indic
Page 207 and 208: Use of recommended additional indic
Page 209 and 210: Table 184: Cross Map Sets Table Use
Page 211 and 212: Keys Partition Size Type Field Name
Page 213 and 214: Table 192: Word Equivalents Table U
Page 215 and 216: 3.2.10. The Stated relationships ta
Page 217 and 218: Figure 41: Overview of Cross Map Sc
Page 219 and 220: Table 197: Cross Maps Sets Table Ma
Page 221 and 222: Table 201: Cross Maps Sets Table Ma
Page 223 and 224: Table 205: Cross Map Sets Table Map
Page 225 and 226: If this approach is followed, there
Page 227 and 228: This approach allows a more consist
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Page 235: CONCEPTID 109778006 109788007 15270
Page 267 and 268: 3.2.13. Enumerated values Value 0 1
Page 269 and 270: Table and Field Subsets SubsetType
Page 271 and 272: 3.3. Release Format 2 Update Guide
Page 273 and 274: • The Release Format should minim
Page 275 and 276: 3.3.3.4. Backward compatibility The
Page 277 and 278: 3.3.4.5. Field Ordering Records in
Page 279 and 280: externalised structures such as Ref
Page 281 and 282: ContextId If either the RealmId fie
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Figure 45: Illustration of module d
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was inactivated. Each Reference ind
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Finally, add members to the Referen
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3.4.1. File Naming Convention - Ove
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• Test/Beta Release File("xsct",
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In certain cases, an RF1 data file
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VersionDate refers to the official,
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Example: Excluding the Fully Specif
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4.2.1.3. Pre-processing of distribu
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• Reject, highlight or apply othe
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Table 236: Essential concept Identi
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The purpose of this section of the
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Table 240: Example results for a Se
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• For each dual key, add rows to
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• Description104951019 is elimina
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4.4.1.4.1. Avoiding multiple hits o
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Table 248: Relationship Example Con
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• Since the depth of the hierarch
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4.4.2.5. Using navigation Subsets t
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Table 253: Concepts used in the Exa
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SubsetId Mem
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• 302402006 | radius and/or ulna
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Now we have tree nodes and their ch
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Subsets may be used to derive table
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• One Subset can be used as the b
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• A Context Concept Subset only r
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• A Navigation Subset specifies a
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• A RealmID identifies the specia
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4.5. Testing and traversing subtype
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This approach removes the need for
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4.5.5.2.4. Using the transitive clo
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Figure 55: Terminology server provi
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A field in the Component History Ta
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Cross maps table A data table consi
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• References Table Inactive compo
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A field in the Cross Maps Table tha
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A Subset that specifies sets of Nav
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A field in the Concepts Table that
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TargetId A SNOMED CT Identifier tha
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WordText A field in the Word Equiva
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