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The Development of Novel Antibiotics Using ... - Jacobs University

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within the macrocycle (Figure 7).<br />

(Release 8.0) s<strong>of</strong>tware using PM3, AMBER and MM+ methods and no influence <strong>of</strong><br />

solvents was taken into account in the calculations. 33,34 Circular Dichroism (CD)<br />

measurements were carried out using Jasco-J-810 Spectropolarimeter in H 2O and<br />

DMSO.<br />

(4R,5R)-2,2-dimethyl-1,3-dioxolane-4,5-dicarbohydrazide 2: To a stirred solution <strong>of</strong><br />

(4R,5R)-dimethyl-2,2-dimethyl-1,3-dioxolane-4,5-dicarboxylate 1 (4.76 g, 21.83 mmol)<br />

in absolute ethanol (20 mL) was added hydrazine monohydrate (2.3 mL, 72.76 mmol)<br />

and the mixture was refluxed for 12 h. <strong>The</strong> solvent was evaporated under vacuum and<br />

the resulting oil was patitionated between ethyl acetate and water (10 mL). To the water<br />

phase was added ethanol (200 mL) and anhydrous Na 2SO 4. <strong>The</strong> solvent was filtered <strong>of</strong>f<br />

and evaporated under vacuum to afford the title product as a white gummy material<br />

(4.21 g, 88%). 1 H NMR (400 MHz, [D6]DMSO, 25 °C, TMS): δ = 9.3 (brs, 2H; NH),<br />

4.4 (brs, 2H; CH), 4.2 (brs, 4H; NH 2), 1.3 ppm (s, 6H; CH 3); 13 C NMR (100 MHz,<br />

[D6]DMSO, 25 °C, TMS): δ =167.8, 112.2, 77.2, 26.6 ppm; FT-IR: ṽ = 3316 (NH and<br />

NH 2), 1660 cm –1 (C[dbond]O); HRMS (ESI-): m/z calcd. for [C 7H 14N 4O 4+ Na + ]:<br />

241.0907 [M+ Na + ]; found: 241.0900.<br />

Figure 7. Circular Dichroism spectra for the novel macrocycles and their precursors.<br />

Conclusion<br />

In summary, we have developed a versatile methodology for the<br />

synthesis <strong>of</strong> a novel class <strong>of</strong> chiral non-racemic tetra-carbohydrazide<br />

cyclophane macrocycles. Both (R) and (S) enantiomers can be<br />

readily synthesised in short reaction steps, high purity and quantitative<br />

yields. <strong>The</strong> novel macrocycles can be functionalized by<br />

simple choice <strong>of</strong> the target ketone or diketal to be protected. This<br />

can lead to the synthesis <strong>of</strong> supramolecular architectures with<br />

fascinating structures and improved solubility. In addition, the<br />

dicarbohydrazide precursors showed interesting molecular selfassembly<br />

in the gas phase to form hydrogen bonded macrocycles,<br />

which has been confirmed by ESI-TOF MS. Further studies aimed<br />

at assessing the molecular recognition properties <strong>of</strong> the novel<br />

macrocycles are under investigation.<br />

Experimental Section<br />

All the reagents used for the reactions were purchased from Sigma-Aldrich, Applichem<br />

or Flucka (Germany) and were used as obtained. Whenever possible the reactions were<br />

monitored by thin layer chromatography (TLC). TLC was performed on Macherey-<br />

Nagel aluminium-backed plates pre-coated with silica gel 60 (UV 254). Melting points<br />

were determined in open capillaries using a Buechl B-545 melting point apparatus and<br />

are not corrected. Infrared spectra were determined using a Vector-33 Bruker FT-IR<br />

spectrometer. <strong>The</strong> samples were measured directly as solids or oils; ṽ max values were<br />

expressed in cm –1 and were given for the main absorption bands. 1 H-NMR and 13 C-<br />

NMR spectra were acquired on a JEOL ECX-400 spectrometer operating at 400 MHz<br />

for 1 H-NMR and 100 MHz for 13 C-NMR in [D6]DMSO or [D7]DMF using a 5 mm<br />

probe. <strong>The</strong> chemical shifts (δ) are reported in parts per million and were referenced to<br />

the residual solvent peak. <strong>The</strong> following abbreviations are used: s, singlet; m, multiplet;<br />

br, broad signal. Mass spectra were recorded using Bruker HCTultra and high resolution<br />

Bruker Daltonics micrOTOF instruments from DMSO, DMF and acetonitrile or water<br />

using the positive electrospray ionisation ESI- and APCI-MS modes. Calibration was<br />

carried out using a 0.1 M solution <strong>of</strong> sodium formate in the enhanced quadratic mode<br />

prior to each experimental run. <strong>The</strong> results <strong>of</strong> measurements were processed using<br />

Compass 1.3 data analysis s<strong>of</strong>tware for a Bruker Daltonics time-<strong>of</strong>-flight mass<br />

spectrometer (micrOTOF). Molecular modeling was carried out with HyperChem<br />

(4S,5S)-2,2-dimethyl-1,3-dioxolane-4,5-dicarbohydrazide 4: To a stirred solution <strong>of</strong><br />

(4S,5S)-dimethyl-2,2-dimethyl-1,3-dioxolane-4,5-dicarboxylate 3 (5.8 g, 26.60 mmol)<br />

in absolute ethanol (20 mL) was added hydrazine monohydrate (2.8 mL, 88.68 mmol)<br />

and the mixture was refluxed for 12 h. <strong>The</strong> solvent was evaporated under vacuum and<br />

the resulting oil was partionated between ethyl acetate and water (10 mL). To the water<br />

phase was added ethanol (200 mL) and anhydrous Na 2SO 4. <strong>The</strong> solvent was filtered <strong>of</strong>f<br />

and evaporated under vacuum to afford the title product as a white gummy material<br />

(4.50 g, 77%). 1 H NMR (400 MHz, [D6]DMSO, 25 °C, TMS): δ = 9.3 (brs, 2H; NH),<br />

4.4 (brs, 2H; CH), 4.3 (brs, 4H; NH 2), 1.3 ppm (s, 6H; CH 3); 13 C NMR (100 MHz,<br />

[D6]DMSO, 25 °C, TMS): δ =167.8, 112.2, 77.2, 26.6 ppm; FT-IR: ṽ = 3316 (NH and<br />

NH 2), 1660 cm –1 (C[dbond]O); HRMS (ESI-): m/z calcd. for [C 7H 14N 4O 4+Na + ]:<br />

241.0907 [M+ Na + ]; found: 241.0900.<br />

(2R,3R)-1,4-dioxaspiro-[4.5]-decane-2,3-dicarbohydrazide 7: To a stirred solution <strong>of</strong><br />

(+)-diethyl L-tartrate (7.5 mL, 44 mmol) in toluene (150 mL) were added 1,1-<br />

dimethoxycyclohexane (10 mL, 65.8 mmol) and PTSA (103 mg, 0.54 mmol). <strong>The</strong> flask<br />

was fitted with a Soxhlet extractor, reflux condenser and a thimble containing freshly<br />

activated 4 Å molecular sieves (15 g). <strong>The</strong> mixture was refluxed for 7h, during which<br />

the thimble was recharged with fresh molecular sieves twice. <strong>The</strong> reaction mixture was<br />

neutralised with anhydrous sodium bicarbonate and the suspension was filtered <strong>of</strong>f. <strong>The</strong><br />

solvent was evaporated under vacuum and the residue was partionated between ethyl<br />

acetate and water, washed with saturated sodium bicarbonate (70 mL), brine (70 mL)<br />

and dried with Na 2SO 4. <strong>The</strong> solvent was filtered <strong>of</strong>f and evaporated under vacuum. <strong>The</strong><br />

crude oil (11.17 g) was dissolved without further purification in absolute ethanol (50<br />

mL) and hydrazine monohydrate was added (4.4 mL, 140 mmol). <strong>The</strong> mixture was<br />

refluxed for 7 h and the solvent was evaporated under vacuum. <strong>The</strong> residue was<br />

dissolved in water (10 mL) and extracted with ethyl acetate (3×50 mL). <strong>The</strong> water<br />

extract was dissolved in ethanol (200 mL), dried with Na 2SO 4 and evaporated under<br />

vacuum to afford the title product as pale yellow gummy material (5.58 g, 55%). 1 H<br />

NMR (400 MHz, [D6]DMSO, 25 °C, TMS): δ = 9.2 (brs, 2H; NH), 4.4 (brs, 2H; CH),<br />

4.3 (brs, 4H; NH 2), 1.4-1.5 (m, 8H; CH 2), 1.2 ppm (m, 2H; CH 2); 13 C NMR (100 MHz,<br />

[D6]DMSO, 25 °C, TMS): δ =167.9, 112.9, 76.9, 35.7, 24.9, 23.8 ppm; FT-IR: ṽ = 3313<br />

(NH and NH 2), 1666 cm –1 (C[dbond]O); HRMS (ESI-): m/z calcd. for<br />

[C 10H 18N 4O 4+Na + ]: 281.1220 [M+ Na + ]; found: 281.1231.<br />

(2S,3S)-1,4-dioxaspiro-[4.5]-decane-2,3-dicarbohydrazide 9: To a stirred solution <strong>of</strong><br />

(-)-diethyl D-tartrate (7.5 mL, 44 mmol) in toluene (150 mL) were added 1,1-<br />

dimethoxycyclohexane (10 mL, 65.8 mmol) and PTSA (103 mg, 0.54 mmol). <strong>The</strong> flask<br />

was fitted with a Soxhlet extractor, reflux condenser and a thimble containing freshly<br />

activated 4 Å molecular sieves (15 g). <strong>The</strong> mixture was refluxed for 7h, during which<br />

5

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