The Development of Novel Antibiotics Using ... - Jacobs University
The Development of Novel Antibiotics Using ... - Jacobs University
The Development of Novel Antibiotics Using ... - Jacobs University
Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
the thimble was recharged with fresh molecular sieves twice. <strong>The</strong> reaction mixture was<br />
neutralised with anhydrous sodium hydrogen carbonate and the suspension was filtered<br />
<strong>of</strong>f. <strong>The</strong> solvent was evaporated under vacuum and the residue was partionated between<br />
ethyl acetate and water, washed with saturated sodium bicarbonate (70 mL), brine (70<br />
mL) and dried with Na 2SO 4. <strong>The</strong> solvent was filtered <strong>of</strong>f and evaporated under vacuum.<br />
<strong>The</strong> crude oil (11.42 g) was dissolved without further purification in absolute ethanol<br />
(50 mL) and hydrazine monohydrate was added (6.3 mL, 201 mmol). <strong>The</strong> mixture was<br />
refluxed for 7 h and the solvent was evaporated under vacuum. <strong>The</strong> residue was<br />
dissolved in water (10 mL) and extracted with ethylacetate (3×50 mL). <strong>The</strong> water<br />
extract was dissolved in ethanol (200 mL), dried with Na 2SO 4 and evaporated under<br />
vacuum to afford the title product as pale yellow gummy material (5.97 g, 56%). 1 H<br />
NMR (400 MHz, [D6]DMSO, 25 °C, TMS): δ = 9.3 (brs, 2H; NH), 4.4 (brs, 2H; CH),<br />
4.0 (brs, 4H; NH 2), 1.4-1.6 (m, 8H; CH 2), 1.2-1.3 ppm (m, 2H; CH 2); 13 C NMR (100<br />
MHz, [D6]DMSO, 25 °C, TMS): δ =167.8, 112.8, 76.9, 35.8, 25.0, 23.8 ppm; FT-IR: ṽ<br />
= 3316 (NH and NH 2), 1666 cm –1 (C[dbond]O); HRMS (ESI-): m/z calcd. for [2<br />
(C 10H 18N 4O 4)+Na + ]: 539.2545 [2M+ Na + ]; found: 539.2550.<br />
General procedures for the synthesis <strong>of</strong> tetra-carbohydrazide cyclophanes 10-17:<br />
To a stirred solution <strong>of</strong> dicarbohydrazide 2, 4, 7 or 9 (1.2 mmol) and the corresponding<br />
dialdehyde (1 mmol) in MeOH (< 0.05 M) was added two drops <strong>of</strong> AcOH. <strong>The</strong> reaction<br />
mixture was refluxed for 7 h. <strong>The</strong> precipitate was filtered <strong>of</strong>f, washed with water,<br />
chlor<strong>of</strong>orm and dried to give the corresponding macrocycle in a quantitative yield.<br />
(3S,4S,16S,17S)-Tetra-carbohydrazide cyclophane 13: Prepared from (4S,5S)-<br />
dimethyl-2,2-dimethyl-1,3-dioxolane-4,5-dicarboxylate 4 and 4,4ʹ-diformyltriphenylamine<br />
as a yellow precipitate (99%). M.p. > 325 °C. 1 H NMR (400 MHz, [D6]DMSO,<br />
25 °C, TMS): δ = 11.5 (brs, 4H; NH), 8.2 (brs, 1H; CH=N), 7.9 (brs, 1H; CH=N), 7.8<br />
(brs, 1H; CH=N), 7.5 (brs, 1H; CH=N), 7.2-7.4 (m, 8H; ArH), 7.0-7.2 (m, 8H; ArH),<br />
6.5-6.8 (m, 10H; ArH), 5.4 (brs, 2H; CH), 4.7 (brs, 1H; CH), 4.5 (brs, 1H; CH), 1.3-1.4<br />
ppm (m, 12H; CH 3); 13 C NMR (100 MHz, [D6]DMSO, 25 °C, TMS): δ = 170.6, 165.3,<br />
148.7, 146.3, 144.4, 130.4, 129.1, 126.1, 123.5, 112.9, 77.5, 26.6 ppm; FT-IR: ṽ = 3212<br />
(NH and NH 2), 1681 cm –1 (C[dbond]O and C[dbond]N); HRMS (APCI-): m/z calcd. for<br />
[C 54H 50N 10O 8+Na + ]: 989.3933 [M+ Na + ]; found: 989.3752.<br />
(3R,4R,16R,17R)-Tetra-carbohydrazide cyclophane 14: Prepared from (2R,3R)-1,4-<br />
dioxaspiro-[4.5]-decane-2,3-dicarbohydrazide 7 and 4-(4-formylphenoxy)-benzaldehyde<br />
as a white precipitate (98%). M.p. > 320 °C. 1 H NMR (400 MHz, [D6]DMSO, 25 °C,<br />
TMS): δ = 11.6 (m, 4H; NH), 8.3 (brs, 1H; CH=N), 8.0 (brs, 1H; CH=N), 7.8 (brs, 1H;<br />
CH=N), 7.4-7.7 (m, 9H; CH=N and ArH), 6.6-7.0 (m, 8H; ArH), 5.4 (brs, 2H; CH), 4.7<br />
(brs, 1H; CH), 4.5 (brs, 1H; CH), 1.6 (brs, 8H; CH 2), 1.5 (brs, 8H; CH 2), 1.3 (brs, 4H;<br />
CH 2); 13 C NMR (100 MHz, [D6]DMSO, 25 °C, TMS): δ =170.8, 165.7, 158.2, 148.5,<br />
144.2, 129.9, 119.4, 113.5, 77.2, 35.8, 25.0, 23.8 ppm; FT-IR: ṽ = 3206 (NH and NH 2),<br />
1681 cm –1 (C[dbond]O and C[dbond]N); HRMS (APCI-): m/z calcd. for [C 48H 48N 8O 10+<br />
H + ]: 897.3566 [M+ H + ]; found: 897.3526.<br />
(3R,4R,16R,17R)-Tetra-carbohydrazide cyclophane 10: Prepared from (4R,5R)-<br />
dimethyl-2,2-dimethyl-1,3-dioxolane-4,5-dicarboxylate 2 and 4-(4-formylphenoxy)-benzaldehyde<br />
as a white precipitate (97%). M.p. > 310 °C. 1 H NMR (400 MHz, [D6]<br />
DMSO, 25 °C, TMS): δ = 11.5-11.6 (m, 4H; NH), 8.3 (brs, 1H; CH=N), 8.0 (brs, 1H;<br />
CH=N), 7.9 (brs, 1H; CH=N), 7.5-7.7 (m, 9H; CH=N and ArH), 6.6-7.0 (m, 8H; ArH),<br />
5.4 (brs, 2H; CH), 4.7 (brs, 1H; CH), 4.5 (brs, 1H; CH), 1.40-1.45 ppm (m, 12H; CH 3);<br />
1 H NMR (400 MHz, [D7]DMF, 25 °C, TMS): δ = 11.6 (brs, 2H; NH), 11.5 (brs, 2H;<br />
NH), 8.5 (brs, 1H; CH=N), 8.2 (brs, 1H; CH=N), 8.1 (brs, 1H; CH=N), 7.9 (brs, 1H;<br />
CH=N), 7.5-7.8 (m, 8H; ArH), 6.8-7.1 (m, 8H; ArH), 5.6 (brs, 2H; CH), 4.9 (brs, 1H;<br />
CH), 4.8 (brs, 1H; CH), 1.4-1.5 ppm (m, 12H; CH 3); 13 C NMR (100 MHz, [D7]DMF,<br />
25 °C, TMS): δ =170.5, 165.8, 158.4, 148.4, 144.2, 129.5, 119.2, 113.0, 77.8, 25.9 ppm;<br />
FT-IR: ṽ = 3208 (NH and NH 2), 1681 cm –1 (C[dbond]O and C[dbond]N); HRMS<br />
(APCI-): m/z calcd. for [C 42H 40N 8O 10+Na+]: 839.2760 [M+ Na + ]; found: 839.2795.<br />
(3R,4R,16R,17R)-Tetra-carbohydrazide cyclophane 11: Prepared from (4R,5R)-<br />
dimethyl-2,2-dimethyl-1,3-dioxolane-4,5-dicarboxylate 2 and 4,4ʹ-diformyltriphenylamine<br />
as a yellow precipitate (99%). M.p. > 325 °C. 1 H NMR (400 MHz, [D6]DMSO,<br />
25 °C, TMS): δ = 11.5 (brs, 4H; NH), 8.2 (brs, 1H; CH=N), 7.9 (brs, 1H; CH=N), 7.8<br />
(brs, 1H; CH=N), 7.5 (brs, 1H; CH=N), 7.2-7.4 (m, 8H; ArH), 6.8-7.0 (m, 8H; ArH),<br />
6.5-6.8 (m, 10H; ArH), 5.4 (brs, 2H; CH), 4.7 (brs, 1H; CH), 4.5 (brs, 1H; CH), 1.3-1.4<br />
ppm (m, 12H; CH 3); 13 C NMR (100 MHz, [D6]DMSO, 25 °C, TMS): δ =170.6, 165.3,<br />
148.7, 146.5,144.4, 130.4, 129.1, 126.2, 123.2, 112.8, 77.5, 26.6 ppm; FT-IR: ṽ = 3212<br />
(NH and NH 2), 1681 cm –1 (C[dbond]O and C[dbond]N); HRMS (APCI-): m/z calcd. for<br />
[C 54H 50N 10O 8+Na + ]: 989.3705 [M+ Na + ]; found: 989.3668.<br />
(3S,4S,16S,17S)-Tetra-carbohydrazide cyclophane 12: Prepared from (4S,5S)-<br />
dimethyl-2,2-dimethyl-1,3-dioxolane-4,5-dicarboxylate 4 and 4-(4-formylphenoxy)-benzaldehyde<br />
as a white precipitate (94%). M.p. > 300 °C. 1 H NMR (400 MHz,<br />
[D6]DMSO, 25 °C, TMS): δ = 11.6 (m, 4H; NH), 8.3 (brs, 1H; CH=N), 8.0 (brs, 1H;<br />
CH=N), 7.9 (brs, 1H; CH=N), 7.5-7.7 (m, 9H; CH=N and ArH), 6.6-7.0 (m, 8H; ArH),<br />
5.4 (brs, 2H; CH), 4.7 (brs, 1H; CH), 4.5 (brs, 1H; CH), 1.3-1.4 ppm (m, 12H; CH 3);<br />
13 C NMR (100 MHz, [D6]DMSO, 25 °C, TMS): δ =170.6, 165.5, 158.2, 148.5, 144.3,<br />
129.7, 119.4, 112.9. 77.5, 26.6 ppm; FT-IR: ṽ = 3211 (NH and NH 2), 1681 cm –1<br />
(C[dbond]O and C[dbond]N); HRMS (APCI-): m/z calcd. for [C 42H 40N 8O 10+Na + ]:<br />
839.2760 [M+ Na + ]; found: 839.2744.<br />
(3R,4R,16R,17R)-Tetra-carbohydrazide cyclophane 15: Prepared from (2R,3R)-1,4-<br />
dioxaspiro-[4.5]-decane-2,3-dicarbohydrazide 7 and 4,4ʹ-diformyltriphenylamine as a<br />
yellow precipitate (99%). M.p. > 310 °C. 1 H NMR (400 MHz, [D6]DMSO, 25 °C,<br />
TMS): δ = 11.5 (m, 4H; NH), 8.2 (brs, 1H; CH=N), 7.9 (brs, 1H; CH=N), 7.8 (brs, 1H;<br />
CH=N), 7.5 (brs, 1H; CH=N), 7.2-7.4 (m, 8H; ArH), 7.0-7.1 (m, 8H; ArH), 6.5-6.7 (m,<br />
10H; ArH), 5.4 (brs, 2H; CH), 4.7 (brs, 1H; CH), 4.5 (brs, 1H; CH), 1.6 (brs, 8H; CH 2),<br />
1.5 (brs, 8H; CH 2), 1.3 (brs, 4H; CH 2); 13 C NMR (100 MHz, [D6]DMSO, 25 °C, TMS):<br />
δ =170.9, 165.5, 146.3, 144.3, 130.4, 129.1, 126.2, 123.5, 113.4, 77.2, 35.9, 25.0, 24.0<br />
ppm; FT-IR: ṽ = 3218 (NH and NH 2), 1681 cm –1 (C[dbond]O and C[dbond]N); HRMS<br />
(APCI-): m/z calcd. for [C 60H 58N 10O 8+H + ]: 1047.4512 [M+ H + ]; found: 1047.4521.<br />
(3S,4S,16S,17S)-Tetra-carbohydrazide cyclophane 16: Prepared from (2S,3S)-1,4-<br />
dioxaspiro-[4.5]-decane-2,3-dicarbohydrazide 9 and 4-(4-formylphenoxy)-benzaldehyde<br />
as a white precipitate (88%). M.p. > 310 °C. 1 H NMR (400 MHz, [D6]DMSO, 25 °C,<br />
TMS): δ = 11.6 (m, 4H; NH), 8.3 (brs, 1H; CH=N), 8.0 (brs, 1H; CH=N), 7.8 (brs, 2H;<br />
CH=N), 7.4-7.7 (m, 8H; ArH), 6.6-7.0 (m, 8H; ArH), 5.4 (brs, 2H; CH), 4.7 (brs, 1H;<br />
CH), 4.5 (brs, 1H; CH), 1.6 (brs, 8H; CH 2), 1.5 (brs, 8H; CH 2), 1.3 (brs, 4H; CH 2); 13 C<br />
NMR (100 MHz, [D6]DMSO, 25 °C, TMS): δ =170.8, 165.6, 158.2, 148.5, 144.2,<br />
129.7, 119.4, 113.5, 77.2, 35.9, 25.0, 24.0 ppm FT-IR: ṽ = 3220 (NH and NH 2), 1682<br />
cm –1 (C[dbond]O and C[dbond]N); HRMS (APCI-): m/z calcd. for [C 48H 48N 8O 10+H + ]:<br />
897.3566 [M+ H + ]; found: 897.3539.<br />
(3S,4S,16S,17S)-Tetra-carbohydrazide cyclophane 17: Prepared from (2S,3S)-1,4-<br />
dioxaspiro-[4.5]-decane-2,3-dicarbohydrazide 9 and 4,4ʹ-diformyltriphenylamine as a<br />
yellow precipitate (89%). M.p. > 310 °C. 1 H NMR (400 MHz, [D6]DMSO, 25 °C,<br />
TMS): δ = 11.5 (m, 4H; NH), 8.2 (brs, 1H; CH=N), 7.9 (brs, 1H; CH=N), 7.8 (brs, 1H;<br />
CH=N), 7.5 (brs, 1H; CH=N), 7.2-7.4 (m, 8H; ArH), 6.9-7.1 (m, 8H; ArH), 6.5-6.9 (m,<br />
10H; ArH), 5.4 (brs, 2H; CH), 4.7 (brs, 1H; CH), 4.5 (brs, 1H; CH), 1.6 (brs, 8H; CH 2),<br />
1.5 (brs, 8H; CH 2), 1.3 (brs, 4H; CH 2); 13 C NMR (100 MHz, [D6]DMSO, 25 °C, TMS):<br />
δ =170.9, 165.4, 146.5, 144.2, 130.4, 128.8, 126.0, 123.4, 113.4, 77.2, 35.8, 25.0, 24.0<br />
ppm; FT-IR: ṽ = 3210 (NH and NH 2), 1681 cm –1 (C[dbond]O and C[dbond]N); HRMS<br />
(APCI-): m/z calcd. for [C 60H 58N 10O 8+H + ]: 1047.4512 [M+ H + ]; found: 1047.4509.<br />
Acknowledgment<br />
Hany Nour deeply thanks the financial support from Deutscher<br />
6