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The Development of Novel Antibiotics Using ... - Jacobs University

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micrOTOF TOF mass spectrometer. Molecular modeling calculations were carried out with<br />

HyperChem s<strong>of</strong>tware (Release 8.0, trial version from http://www.hypercube.com, USA) [29] using<br />

Austin Model 1 (AM1) method. A Polak-Ribiere algorithm was employed until the root-mean<br />

square (RMS) gradient was 0.01 kcal.mol –1 . All calculations were carried out in vacuo and no<br />

influence <strong>of</strong> solvents was taken into account. [30]<br />

(2R,3R)-Ethyl 2,3-di(hydrazinecarbonyl)1,4-dioxa-8-azaspiro[4.5]decane-8-carboxylate 26<br />

To a stirred solution <strong>of</strong> (+)-diethyl L-tartrate 24 (5.7 mL, 33.29 mmol) in ethyl acetate (20 mL)<br />

were added ethyl 4-oxopiperidine-1-carboxylate 25 (5 mL, 33.19 mmol) and boron trifluoride<br />

etherate (17 mL, 82.97 mmol). <strong>The</strong> mixture was refluxed for 7 h, cooled to room temperature,<br />

carefully quenched with saturated sodium bicarbonate solution (100 mL), extracted with water,<br />

dried with sodium sulfate, filtered <strong>of</strong>f and evaporated in vacuum. <strong>The</strong> crude oil (10.29 g) was<br />

dissolved without further purification in absolute ethanol (40 mL) and hydrazine monohydrate<br />

was added (3 mL). <strong>The</strong> mixture was refluxed for 7 h. <strong>The</strong> solvent was evaporated in vacuum; the<br />

residue was dissolved in water (10 mL) and extracted with ethyl acetate (3×100 mL). <strong>The</strong> water<br />

extract was dissolved in ethanol (200 mL), dried and evaporated in vacuum to give compound 26<br />

as a yellow gummy material (4.36 g, 13.17 mmol) in 46 % yield. 1 H NMR (400 MHz,<br />

[D 6 ]DMSO, 300 K): δ = 1.3 (t, J = 7.3, CH 3 , 3H), 1.5-1.7 (m, CH 2 , 4H), 3.3-3.4 (m, CH 2 , 4H),<br />

3.9-4.0 (q, J = 7.3, CH 2 , 2H), 3.4 (brs, NH 2 , 4H), 4.4 (brs, CH, 2H), 9.3 (brs, NH, 2H) ppm. 13 C<br />

NMR (100 MHz, [D 6 ]DMSO, 300 K): δ = 15.0, 35.4, 41.8, 61.3, 77.2, 110.9, 155.0, 167.6 ppm;<br />

FT-IR: ṽ = 3309 (NH and NH 2 ), 1668 cm –1 (C[dbond]O); HRMS (ESI, negative ion mode):<br />

Calcd. for [C 12 H 21 N 5 O 6 –H + ]: 330.1436; found 330.1419, (Error, ˗5.0 ppm ).<br />

Dynamic reversibility <strong>of</strong> tetra-carbohydrazide cyclophane macrocycles<br />

(a) Refluxing compounds 1, 2, 3 and 4 in DMF/MeOH<br />

(2R,3R)-1,4-Dioxaspiro[4.5]decane-2,3-dicarbohydrazide 1 (100 mg, 0.39 mmol), (4R,5R)-1,3-<br />

dioxolane-4,5-dicarbohydrazide 4 (147.3 mg, 0.78 mmol), 4-(4-formylphenoxy)benzaldehyde 2<br />

(175.2 mg, 0.78 mmol) and 4,4'-diformyltriphenylamine 3 (116.67 mg, 0.39 mmol) were mixed<br />

in 5 mL MeOH and 5 mL DMF, 50 µL <strong>of</strong> catalytic AcOH were added and the mixture was<br />

refluxed for 192 h. Aliquot was taken and 5 µL <strong>of</strong> DMF was added. Sample was well sonicated,<br />

diluted with ACN and infused into the ESI-TOF mass spectrometer in the positive ion mode.<br />

5 | P a g e

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