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TECHNICAL PROGRAM - American Chemical Society Publications

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PHYS <strong>TECHNICAL</strong> <strong>PROGRAM</strong><br />

Boston Convention & Exhibition Center<br />

Hall C<br />

<strong>Chemical</strong> Computations on General<br />

Purpose Graphics Processing Units<br />

(GP-GPUs)<br />

J. D. Madura, M. Johnson, V. Kindratenko,<br />

Organizers<br />

6:00–9:00<br />

363. Toward unforced molecular dynamics<br />

simulations of protein binding. J. Kaus,<br />

M. Zwier, X. Qi, L. Chong<br />

364. Incorporating automatic differentiation<br />

into internal coordinates for potential energy<br />

surface exploration.<br />

J. L. Sonnenberg, H. P. Hratchian,<br />

M. J. Frisch<br />

365. Accelerating correlated quantum chemistry<br />

calculations using graphical processing<br />

units. M. A. Watson,<br />

R. Olivares-Amaya, R. G. Edgar, L. Vogt,<br />

A. Aspuru-Guzik<br />

366. Theoretical investigations of EMIM-Tf 2N<br />

small cluster stability and dynamics.<br />

B. D. Prince, Y. Chiu, J. A. Boatz,<br />

E. J. Maginn<br />

367. Binding energy calculations of 4d and<br />

5d transition metal complexes.<br />

B. B. Averkiev, Y. Zhao, D. G. Truhlar<br />

Boston Convention & Exhibition Center<br />

Hall C<br />

Electrons in Bio-Molecules<br />

M. Johnson, J. Weber, J. Simons,<br />

Organizers<br />

6:00–9:00<br />

368. Cooperative effect in the electronic<br />

properties of human telomere sequence.<br />

T. Z. Markus, S. S. Daube, R. Naaman<br />

369. Electronic excitations in solution: Firstprinciples<br />

based QM/MM study.<br />

D. Kosenkov, L. V. Slipchenko<br />

370. Computational approach to study lignocellulosic<br />

biomass conversion to fuels.<br />

Y. A. Kholod, M. H. Lamm, T. L. Windus,<br />

M. S. Gordon<br />

371. Excited state dynamics of solutionphase<br />

photosynthetic antenna proteins<br />

studied one at a time. R. H. Goldsmith,<br />

W. Moerner<br />

372. Electronic excitation cross sections for<br />

low-energy electron (� 18 eV) scattering<br />

from cytosine: Applications in nanodosimetry.<br />

L. Sanche, M. Bazin,<br />

M. Michaud<br />

373. Low-energy-electron interaction with<br />

self-assembled monolayers of DNA containing<br />

O 2 at cryogenic temperatures.<br />

L. Sanche, N. Mirsaleh-Kohan, A. Bass,<br />

P. Cloutier<br />

374. Water makes Heme-Heme protein interface<br />

less repulsive. S. Keinan,<br />

R. Venkatramani, J. M. Nocek,<br />

D. N. Beratan, B. M. Hoffman<br />

375. Calculating redox free energies in solution<br />

and protein with ab initio QM/MM<br />

minimum free energy path method.<br />

X. Zeng, H. Hu, X. Hu, W. Yang<br />

376. 5-Fluorosalicylic acid in its electronically<br />

excited S 1 state. J. W. Young,<br />

A. J. Fleisher, D. W. Pratt<br />

377. Kinetics of electron transfer in<br />

Re(H126)(W122) Pseudomonas aeruginosa<br />

azurin. H. R. Williamson,<br />

L. Sokolova, J. Sykora, J. R. Winkler,<br />

A. Vlcek, H. B. Gray<br />

378. Theoretical study of coherent energy<br />

transfer in photosynthetic systems.<br />

P. Huo,D.F.Coker<br />

379. Comparing theoretical and experimental<br />

evidence to describe systems like<br />

8-oxo-2�-deoxyguanosine (OdG) and<br />

similarly-damaged DNA nucleosides.<br />

A. J. Parker, T. W. Steele, M. Hamm,<br />

C. A. Parish<br />

380. Charge transfer processes in longrange<br />

DNA sequences. E. Sim,H.Kim,<br />

J. Lee<br />

‡ Cooperative Cosponsorship<br />

106–TECH<br />

381. Dynamics of electronic dephasing in the<br />

Fenna-Matthews-Olson complex.<br />

D. Hayes, G. Panitchayangkoon,<br />

K. A. Fransted, J. R. Caram, K. F. Freed,<br />

G. S. Engel<br />

382. Excited state behavior of stacked<br />

nucleobase dimer systems containing<br />

2-aminopurine. J. Liang, S. Matsika<br />

383. Investigation of excited state proton<br />

transfer in green fluorescent protein.<br />

A. McClelland, A. Demidov,<br />

A. Benabbas, Y. Sun, K. Venugopal,<br />

T. Sage, J. van Thor, P. Champion<br />

384. Imaging protein folding dynamics in living<br />

cells. A. Dhar, S. Ebbinghaus,<br />

M. Gruebele<br />

385. Comparison of infrared multiple-photon<br />

dissociation spectra of protonated diglyme<br />

generated using a CO 2 laser and a<br />

free electron laser. M. U. Ehsan,<br />

W. L. Pearson, J. R. Eyler<br />

386. Investigation of membrane-penetrating<br />

peptides: Insights from atomistic and<br />

coarse-grained models. Z. Wu,Q.Cui,<br />

A. Yethiraj<br />

387. Evidence for concerted electron proton<br />

transfer in charge recombination between<br />

FADH – and 306 Trp� in DNA photolyase.<br />

A. A. Zieba, C. Richardson, S. D. Dieng,<br />

Y. M. Gindt, J. M. Schelvis<br />

388. Recent developments in the multiscale<br />

coarse-graining (MS-CG) method: Towards<br />

systematic and accurate CG modelling<br />

of complex systems. A. Das,<br />

H. C. Andersen<br />

Boston Convention & Exhibition Center<br />

Hall C<br />

Metals in Biology<br />

A. Palmer, M. Johnson, Organizers<br />

6:00–9:00<br />

389. Withdrawn<br />

390. On the nature of interaction of magnesium<br />

ions with the ribosome. U. Mohanty<br />

391. Electrostatic docking of a supramolecular<br />

host-guest assembly to cytochrome c<br />

probed by bidirectional photoinduced<br />

electron transfer. K. I. Jankowska,<br />

C. V. Pagba, E. L. Piatnitski Chekler,<br />

K. Deshayes, P. Piotrowiak<br />

392. Topological analysis of the active site of<br />

human DNA polymerase � provides insight<br />

on metal ion mutagenicity in DNA<br />

synthesis. R. Chaudret, J. Piquemal,<br />

G. A. Cisneros<br />

393. Computational design of carbonic anhydrase<br />

mimics for carbon dioxide capture.<br />

H. J. Kulik, S. E. Wong, E. Y. Lau,<br />

C. Valdez, S. Baker, J. H. Satcher,<br />

R. D. Aines, F. C. Lightstone<br />

394. Effect of magnesium ion concentration<br />

on the catalytic activity of ribonuclease H:<br />

Does a third metal bound at the active<br />

site modulate endonuclease catalysis?<br />

M. Ho, M. De Vivo, M. Dal Peraro,<br />

M. L. Klein<br />

395. Investigation of multiheme cytochromes<br />

in Shewanella oneidensis MR-1: Developing<br />

a model pathway for electron transfer.<br />

M. A. Firer Sherwood, N. Ando,<br />

C. L. Drennan, S. J. Elliott<br />

396. Investigating electron transfer through<br />

bacterial diheme proteins: Cytochrome c<br />

peroxidases and MauG. K. Ellis,<br />

G. Pulcu, H. Hsu, G. Levine, V. Davidson,<br />

S. Elliott<br />

397. Temperature induced protein motions<br />

indicate link to function. J. Borreguero,<br />

J. He, C. Brown, D. Myles, K. Herwig,<br />

P. Agarwal<br />

398. Methionine ligand lability in monhome<br />

cytochromes c: An electrochemical<br />

study. B. D. Levin, K. Bren, S. J. Elliott<br />

399. Redox reactivity and drug binding in mitoNEET.<br />

D. W. Bak, J. A. Zuris,<br />

M. L. Paddock, P. A. Jennings,<br />

S. J. Elliott<br />

400. Electronic changes in cytochromes c<br />

with functional consequences.<br />

M. D. Liptak,K.L.Bren<br />

401. Metal-cation enhanced deprotonation<br />

of water by photobases. D. Pines,<br />

N. Papiashvily, E. T. Nibbering, E. Pines<br />

402. Thermodynamic studies of carbon dioxide<br />

and carbonic anhydrase with quasichemical<br />

theory. D. Jiao,S.Rempe<br />

403. Copper coordination modes in the<br />

91-96 and 106-113 fragments of the human<br />

prion protein: The second and third<br />

sites. R. Grande-Aztatzi,<br />

L. Rivillas-Acevedo, L. Quintanar, A. Vela<br />

404. Mechanism of C-F reductive elimination<br />

from palladium(IV) fluorides.<br />

E. Tkatchouk, F. Takeru, D. Benitez,<br />

A. E. Strom, P. Tang, T. Ritter,<br />

W. A. Goddard<br />

405. Acidity of complexes of acetylene and<br />

row four transition metals from electronic<br />

structure calculations. J. W. Beattie,<br />

J. E. Stevens<br />

406. Synthesis and characterization of donor-porphyrin-acceptor<br />

triads.<br />

J. Rochford, D. Polyansky<br />

407. Ultrafast energy delocalization in porphyrin<br />

macrocycles: Elucidating a ninetyfold<br />

two photon cross section enhancement.<br />

J. E. Raymond, T. Goodson<br />

408. Circular dichroism study of the cationinduced<br />

conformational differences in<br />

guanosine 5�-monophosphate. M. Panda,<br />

J. A. Walmsley<br />

409. Evolution of intensive plasmon resonances<br />

by the geometric control of colloidal<br />

copper nanoprisms in nonionic microemulsions.<br />

Y. Park,H.Chae<br />

410. Active-site dynamics of the SpvC virulence<br />

factor from Salmonella typhimurium<br />

and density functional model for the catalytic<br />

mechanism of the phosphthreonine<br />

lyase. G. K. Smith, Z. Ke, A. C. Hengge,<br />

D. Xu, D. Xie, H. Guo<br />

411. Hybrid rotational isomer state diffusion<br />

operator method for efficient calculation<br />

of high field electron spin resonance<br />

spectra from molecular dynamics. P. Yin,<br />

M. Ondrechen, D. E. Budil, P. G. Fajer<br />

412. Ultrafast dynamics of ligand substitution<br />

of iron pentacarbonyl in ethanol.<br />

B. Ahr, M. Chollet, B. Adams,<br />

C. Rose-Petruck<br />

413. Colloidal supported metal nanoparticles<br />

(CSMNs) as novel intermediate nanocatalysts<br />

for liquid phase Suzuki cross-coupling<br />

reactions. K. Gude, R. Narayanan<br />

414. Bimolecular encounters: Acid-base<br />

and/or electron transfer in ruthenium (II)<br />

complexes, experiment and theory.<br />

M. Kowalczyk, J. C. Colis, A. Perri,<br />

C. Yun, S. Jang, H. D. Gafney<br />

415. Molecular simulation of the nucleation<br />

and growth of Pd-Ni nanoparticles.<br />

K. D. Watson, S. E. Tatsinkou,<br />

C. Desgranges, J. Delhommelle<br />

416. Modeling orientations of a nitroxide spin<br />

label in 3D space. J. M. McCracken,<br />

D. J. Hirsh<br />

417. Novel ligand-exchange technique for<br />

rapid functionalization of monolayer-protected<br />

gold nanoparticles. Z. Reed,<br />

R. Wallace, S. Cutler, M. Stobiecka,<br />

M. Hepel<br />

418. Gold nanoparticles as drug delivery<br />

vectors. T. Doane, Y. Cheng,<br />

M. E. Kenney, C. Burda<br />

419. Limited proteolysis and circular dichroism<br />

studies of the aggregation of the<br />

amyloid-� protein. K. MacDowell,<br />

N. D. Lazo<br />

420. Zn(II)-OH 2 interactions in metalloenzymes:<br />

Where are the protons?<br />

D. P. Linder<br />

421. Quantum mechanical modeling of a Tripodal<br />

[2]rotaxane. C. Lee, G. Maeng,<br />

H. Kim, K. Sohlberg<br />

422. Recent developments and uses of theoretical<br />

spectrosocopy in bioinorganic<br />

chemistry. F. Neese<br />

Boston Convention & Exhibition Center<br />

Hall C<br />

Molecular Systems for Efficient Solar<br />

Energy Conversion and Storage<br />

C. Schmuttenmaer, M. Johnson, V.<br />

Batista, Organizers<br />

6:00–9:00<br />

423. Solar energy conversion with atomic<br />

layer deposition grown WO 3.<br />

S. W. Sheehan,Y.Lin,X.Liu,D.Wang<br />

424. Artificial photosynthetic antennas from<br />

the self-assembly of peptide-porphyrin<br />

complexes. L. Hagens, M. Reca,<br />

M. Warner, D. Kuciauskas, G. A. Caputo<br />

425. Surface chemistry with photo-sensitive<br />

stepped metal–insulator–semiconductor<br />

heterosystems. K. Stella, D. A. Kovacs,<br />

W. Brezna, J. Smoliner, D. Diesing<br />

426. General method for the direct exfoliation<br />

of inorganic layered structures into<br />

atomically-ordered single nanosheets.<br />

P. F. Fulvio, X. Wang, S. M. Mahurin,<br />

G. A. Baker, G. M. Veith, R. R. Unocic,<br />

S. Dai<br />

427. Coherence energy transfer in a photosynthetic<br />

complex.<br />

G. Panitchayangkoon, D. Hayes,<br />

K. A. Fransted, J. R. Caram, E. Harel,<br />

J. Wen, R. E. Blankenship, G. S. Engel<br />

428. P3HT/PCBM composite organic nanoparticles<br />

for solar cell applications: Structure-function<br />

relationships. M. Mathew,<br />

Z. Hu, A. J. Gesquiere<br />

429. Photocatalytic and spectroscopic studies<br />

of an environmentally relevant surface.<br />

F. M. Dukes, N. Asong, M. Shultz<br />

430. Investigation of electrochemical mechanism<br />

of water splitting on titanium oxide<br />

clusters. L. B. Pandey,C.M.Aikens<br />

431. Miscibility of PCBM in P3HT at the molecular<br />

level in polymer solar cells.<br />

B. A. Collins, J. Seok, H. Yan,<br />

C. McNeill, D. Kilcoyne, H. Ade<br />

432. Enhancement of photocurrent in dye<br />

sensitized solar cells incorporating cyclometalated<br />

ruthenium complexes with CuI<br />

as an electrolyte additive: Electrochemical<br />

analysis under dark conditions.<br />

T. Ghaddar<br />

433. New paradigms for semiconductor assemblies<br />

for photovoltaic cells.<br />

D. Venkataraman, B. Venkatraman,<br />

K. Reeves<br />

434. Ultrafast transient absorption and surface<br />

enhanced Raman of photosynthetic<br />

reaction centers linked to silver nanoparticles.<br />

S. J. Murphy, C. Postnikoff,<br />

P. V. Kamat, L. Huang<br />

435. Design and properties of iron based<br />

photosensitizers for dye-sensitized solar<br />

cells. F. A. Jove, Y. Chou, B. B. Wayland,<br />

H. Dai<br />

436. Large, stable graphene quantum dots<br />

with tunable size and energy levels. B. Li,<br />

X. Yan, X. Cui, L. Li<br />

437. Influence of pore loading and pore<br />

shape on the properties of ionic liquids<br />

confined inside nanoporous carbons.<br />

J. D. Monk,F.R.Hung<br />

438. Electrochemical preparation of p-type<br />

ternary metal oxides for solar energy conversion.<br />

C. G. Read,K.Choi<br />

439. 2D Fourier transform spectroscopy of<br />

light harvesting complex II.<br />

S. M. Wichner, P. D. Long, G. S. Engel<br />

440. Light harvesting mechanisms: Excitonphonon<br />

coupling in thiophene macrocycles<br />

at low temperature. D. Flynn,<br />

T. Goodson<br />

441. Energy relaxation dynamics of self-assembled<br />

porphyrin macrocycles.<br />

J. E. Donehue, T. Goodson, Z. S. Yoon<br />

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