TECHNICAL PROGRAM - American Chemical Society Publications
TECHNICAL PROGRAM - American Chemical Society Publications
TECHNICAL PROGRAM - American Chemical Society Publications
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PHYS <strong>TECHNICAL</strong> <strong>PROGRAM</strong><br />
Boston Convention & Exhibition Center<br />
Hall C<br />
<strong>Chemical</strong> Computations on General<br />
Purpose Graphics Processing Units<br />
(GP-GPUs)<br />
J. D. Madura, M. Johnson, V. Kindratenko,<br />
Organizers<br />
6:00–9:00<br />
363. Toward unforced molecular dynamics<br />
simulations of protein binding. J. Kaus,<br />
M. Zwier, X. Qi, L. Chong<br />
364. Incorporating automatic differentiation<br />
into internal coordinates for potential energy<br />
surface exploration.<br />
J. L. Sonnenberg, H. P. Hratchian,<br />
M. J. Frisch<br />
365. Accelerating correlated quantum chemistry<br />
calculations using graphical processing<br />
units. M. A. Watson,<br />
R. Olivares-Amaya, R. G. Edgar, L. Vogt,<br />
A. Aspuru-Guzik<br />
366. Theoretical investigations of EMIM-Tf 2N<br />
small cluster stability and dynamics.<br />
B. D. Prince, Y. Chiu, J. A. Boatz,<br />
E. J. Maginn<br />
367. Binding energy calculations of 4d and<br />
5d transition metal complexes.<br />
B. B. Averkiev, Y. Zhao, D. G. Truhlar<br />
Boston Convention & Exhibition Center<br />
Hall C<br />
Electrons in Bio-Molecules<br />
M. Johnson, J. Weber, J. Simons,<br />
Organizers<br />
6:00–9:00<br />
368. Cooperative effect in the electronic<br />
properties of human telomere sequence.<br />
T. Z. Markus, S. S. Daube, R. Naaman<br />
369. Electronic excitations in solution: Firstprinciples<br />
based QM/MM study.<br />
D. Kosenkov, L. V. Slipchenko<br />
370. Computational approach to study lignocellulosic<br />
biomass conversion to fuels.<br />
Y. A. Kholod, M. H. Lamm, T. L. Windus,<br />
M. S. Gordon<br />
371. Excited state dynamics of solutionphase<br />
photosynthetic antenna proteins<br />
studied one at a time. R. H. Goldsmith,<br />
W. Moerner<br />
372. Electronic excitation cross sections for<br />
low-energy electron (� 18 eV) scattering<br />
from cytosine: Applications in nanodosimetry.<br />
L. Sanche, M. Bazin,<br />
M. Michaud<br />
373. Low-energy-electron interaction with<br />
self-assembled monolayers of DNA containing<br />
O 2 at cryogenic temperatures.<br />
L. Sanche, N. Mirsaleh-Kohan, A. Bass,<br />
P. Cloutier<br />
374. Water makes Heme-Heme protein interface<br />
less repulsive. S. Keinan,<br />
R. Venkatramani, J. M. Nocek,<br />
D. N. Beratan, B. M. Hoffman<br />
375. Calculating redox free energies in solution<br />
and protein with ab initio QM/MM<br />
minimum free energy path method.<br />
X. Zeng, H. Hu, X. Hu, W. Yang<br />
376. 5-Fluorosalicylic acid in its electronically<br />
excited S 1 state. J. W. Young,<br />
A. J. Fleisher, D. W. Pratt<br />
377. Kinetics of electron transfer in<br />
Re(H126)(W122) Pseudomonas aeruginosa<br />
azurin. H. R. Williamson,<br />
L. Sokolova, J. Sykora, J. R. Winkler,<br />
A. Vlcek, H. B. Gray<br />
378. Theoretical study of coherent energy<br />
transfer in photosynthetic systems.<br />
P. Huo,D.F.Coker<br />
379. Comparing theoretical and experimental<br />
evidence to describe systems like<br />
8-oxo-2�-deoxyguanosine (OdG) and<br />
similarly-damaged DNA nucleosides.<br />
A. J. Parker, T. W. Steele, M. Hamm,<br />
C. A. Parish<br />
380. Charge transfer processes in longrange<br />
DNA sequences. E. Sim,H.Kim,<br />
J. Lee<br />
‡ Cooperative Cosponsorship<br />
106–TECH<br />
381. Dynamics of electronic dephasing in the<br />
Fenna-Matthews-Olson complex.<br />
D. Hayes, G. Panitchayangkoon,<br />
K. A. Fransted, J. R. Caram, K. F. Freed,<br />
G. S. Engel<br />
382. Excited state behavior of stacked<br />
nucleobase dimer systems containing<br />
2-aminopurine. J. Liang, S. Matsika<br />
383. Investigation of excited state proton<br />
transfer in green fluorescent protein.<br />
A. McClelland, A. Demidov,<br />
A. Benabbas, Y. Sun, K. Venugopal,<br />
T. Sage, J. van Thor, P. Champion<br />
384. Imaging protein folding dynamics in living<br />
cells. A. Dhar, S. Ebbinghaus,<br />
M. Gruebele<br />
385. Comparison of infrared multiple-photon<br />
dissociation spectra of protonated diglyme<br />
generated using a CO 2 laser and a<br />
free electron laser. M. U. Ehsan,<br />
W. L. Pearson, J. R. Eyler<br />
386. Investigation of membrane-penetrating<br />
peptides: Insights from atomistic and<br />
coarse-grained models. Z. Wu,Q.Cui,<br />
A. Yethiraj<br />
387. Evidence for concerted electron proton<br />
transfer in charge recombination between<br />
FADH – and 306 Trp� in DNA photolyase.<br />
A. A. Zieba, C. Richardson, S. D. Dieng,<br />
Y. M. Gindt, J. M. Schelvis<br />
388. Recent developments in the multiscale<br />
coarse-graining (MS-CG) method: Towards<br />
systematic and accurate CG modelling<br />
of complex systems. A. Das,<br />
H. C. Andersen<br />
Boston Convention & Exhibition Center<br />
Hall C<br />
Metals in Biology<br />
A. Palmer, M. Johnson, Organizers<br />
6:00–9:00<br />
389. Withdrawn<br />
390. On the nature of interaction of magnesium<br />
ions with the ribosome. U. Mohanty<br />
391. Electrostatic docking of a supramolecular<br />
host-guest assembly to cytochrome c<br />
probed by bidirectional photoinduced<br />
electron transfer. K. I. Jankowska,<br />
C. V. Pagba, E. L. Piatnitski Chekler,<br />
K. Deshayes, P. Piotrowiak<br />
392. Topological analysis of the active site of<br />
human DNA polymerase � provides insight<br />
on metal ion mutagenicity in DNA<br />
synthesis. R. Chaudret, J. Piquemal,<br />
G. A. Cisneros<br />
393. Computational design of carbonic anhydrase<br />
mimics for carbon dioxide capture.<br />
H. J. Kulik, S. E. Wong, E. Y. Lau,<br />
C. Valdez, S. Baker, J. H. Satcher,<br />
R. D. Aines, F. C. Lightstone<br />
394. Effect of magnesium ion concentration<br />
on the catalytic activity of ribonuclease H:<br />
Does a third metal bound at the active<br />
site modulate endonuclease catalysis?<br />
M. Ho, M. De Vivo, M. Dal Peraro,<br />
M. L. Klein<br />
395. Investigation of multiheme cytochromes<br />
in Shewanella oneidensis MR-1: Developing<br />
a model pathway for electron transfer.<br />
M. A. Firer Sherwood, N. Ando,<br />
C. L. Drennan, S. J. Elliott<br />
396. Investigating electron transfer through<br />
bacterial diheme proteins: Cytochrome c<br />
peroxidases and MauG. K. Ellis,<br />
G. Pulcu, H. Hsu, G. Levine, V. Davidson,<br />
S. Elliott<br />
397. Temperature induced protein motions<br />
indicate link to function. J. Borreguero,<br />
J. He, C. Brown, D. Myles, K. Herwig,<br />
P. Agarwal<br />
398. Methionine ligand lability in monhome<br />
cytochromes c: An electrochemical<br />
study. B. D. Levin, K. Bren, S. J. Elliott<br />
399. Redox reactivity and drug binding in mitoNEET.<br />
D. W. Bak, J. A. Zuris,<br />
M. L. Paddock, P. A. Jennings,<br />
S. J. Elliott<br />
400. Electronic changes in cytochromes c<br />
with functional consequences.<br />
M. D. Liptak,K.L.Bren<br />
401. Metal-cation enhanced deprotonation<br />
of water by photobases. D. Pines,<br />
N. Papiashvily, E. T. Nibbering, E. Pines<br />
402. Thermodynamic studies of carbon dioxide<br />
and carbonic anhydrase with quasichemical<br />
theory. D. Jiao,S.Rempe<br />
403. Copper coordination modes in the<br />
91-96 and 106-113 fragments of the human<br />
prion protein: The second and third<br />
sites. R. Grande-Aztatzi,<br />
L. Rivillas-Acevedo, L. Quintanar, A. Vela<br />
404. Mechanism of C-F reductive elimination<br />
from palladium(IV) fluorides.<br />
E. Tkatchouk, F. Takeru, D. Benitez,<br />
A. E. Strom, P. Tang, T. Ritter,<br />
W. A. Goddard<br />
405. Acidity of complexes of acetylene and<br />
row four transition metals from electronic<br />
structure calculations. J. W. Beattie,<br />
J. E. Stevens<br />
406. Synthesis and characterization of donor-porphyrin-acceptor<br />
triads.<br />
J. Rochford, D. Polyansky<br />
407. Ultrafast energy delocalization in porphyrin<br />
macrocycles: Elucidating a ninetyfold<br />
two photon cross section enhancement.<br />
J. E. Raymond, T. Goodson<br />
408. Circular dichroism study of the cationinduced<br />
conformational differences in<br />
guanosine 5�-monophosphate. M. Panda,<br />
J. A. Walmsley<br />
409. Evolution of intensive plasmon resonances<br />
by the geometric control of colloidal<br />
copper nanoprisms in nonionic microemulsions.<br />
Y. Park,H.Chae<br />
410. Active-site dynamics of the SpvC virulence<br />
factor from Salmonella typhimurium<br />
and density functional model for the catalytic<br />
mechanism of the phosphthreonine<br />
lyase. G. K. Smith, Z. Ke, A. C. Hengge,<br />
D. Xu, D. Xie, H. Guo<br />
411. Hybrid rotational isomer state diffusion<br />
operator method for efficient calculation<br />
of high field electron spin resonance<br />
spectra from molecular dynamics. P. Yin,<br />
M. Ondrechen, D. E. Budil, P. G. Fajer<br />
412. Ultrafast dynamics of ligand substitution<br />
of iron pentacarbonyl in ethanol.<br />
B. Ahr, M. Chollet, B. Adams,<br />
C. Rose-Petruck<br />
413. Colloidal supported metal nanoparticles<br />
(CSMNs) as novel intermediate nanocatalysts<br />
for liquid phase Suzuki cross-coupling<br />
reactions. K. Gude, R. Narayanan<br />
414. Bimolecular encounters: Acid-base<br />
and/or electron transfer in ruthenium (II)<br />
complexes, experiment and theory.<br />
M. Kowalczyk, J. C. Colis, A. Perri,<br />
C. Yun, S. Jang, H. D. Gafney<br />
415. Molecular simulation of the nucleation<br />
and growth of Pd-Ni nanoparticles.<br />
K. D. Watson, S. E. Tatsinkou,<br />
C. Desgranges, J. Delhommelle<br />
416. Modeling orientations of a nitroxide spin<br />
label in 3D space. J. M. McCracken,<br />
D. J. Hirsh<br />
417. Novel ligand-exchange technique for<br />
rapid functionalization of monolayer-protected<br />
gold nanoparticles. Z. Reed,<br />
R. Wallace, S. Cutler, M. Stobiecka,<br />
M. Hepel<br />
418. Gold nanoparticles as drug delivery<br />
vectors. T. Doane, Y. Cheng,<br />
M. E. Kenney, C. Burda<br />
419. Limited proteolysis and circular dichroism<br />
studies of the aggregation of the<br />
amyloid-� protein. K. MacDowell,<br />
N. D. Lazo<br />
420. Zn(II)-OH 2 interactions in metalloenzymes:<br />
Where are the protons?<br />
D. P. Linder<br />
421. Quantum mechanical modeling of a Tripodal<br />
[2]rotaxane. C. Lee, G. Maeng,<br />
H. Kim, K. Sohlberg<br />
422. Recent developments and uses of theoretical<br />
spectrosocopy in bioinorganic<br />
chemistry. F. Neese<br />
Boston Convention & Exhibition Center<br />
Hall C<br />
Molecular Systems for Efficient Solar<br />
Energy Conversion and Storage<br />
C. Schmuttenmaer, M. Johnson, V.<br />
Batista, Organizers<br />
6:00–9:00<br />
423. Solar energy conversion with atomic<br />
layer deposition grown WO 3.<br />
S. W. Sheehan,Y.Lin,X.Liu,D.Wang<br />
424. Artificial photosynthetic antennas from<br />
the self-assembly of peptide-porphyrin<br />
complexes. L. Hagens, M. Reca,<br />
M. Warner, D. Kuciauskas, G. A. Caputo<br />
425. Surface chemistry with photo-sensitive<br />
stepped metal–insulator–semiconductor<br />
heterosystems. K. Stella, D. A. Kovacs,<br />
W. Brezna, J. Smoliner, D. Diesing<br />
426. General method for the direct exfoliation<br />
of inorganic layered structures into<br />
atomically-ordered single nanosheets.<br />
P. F. Fulvio, X. Wang, S. M. Mahurin,<br />
G. A. Baker, G. M. Veith, R. R. Unocic,<br />
S. Dai<br />
427. Coherence energy transfer in a photosynthetic<br />
complex.<br />
G. Panitchayangkoon, D. Hayes,<br />
K. A. Fransted, J. R. Caram, E. Harel,<br />
J. Wen, R. E. Blankenship, G. S. Engel<br />
428. P3HT/PCBM composite organic nanoparticles<br />
for solar cell applications: Structure-function<br />
relationships. M. Mathew,<br />
Z. Hu, A. J. Gesquiere<br />
429. Photocatalytic and spectroscopic studies<br />
of an environmentally relevant surface.<br />
F. M. Dukes, N. Asong, M. Shultz<br />
430. Investigation of electrochemical mechanism<br />
of water splitting on titanium oxide<br />
clusters. L. B. Pandey,C.M.Aikens<br />
431. Miscibility of PCBM in P3HT at the molecular<br />
level in polymer solar cells.<br />
B. A. Collins, J. Seok, H. Yan,<br />
C. McNeill, D. Kilcoyne, H. Ade<br />
432. Enhancement of photocurrent in dye<br />
sensitized solar cells incorporating cyclometalated<br />
ruthenium complexes with CuI<br />
as an electrolyte additive: Electrochemical<br />
analysis under dark conditions.<br />
T. Ghaddar<br />
433. New paradigms for semiconductor assemblies<br />
for photovoltaic cells.<br />
D. Venkataraman, B. Venkatraman,<br />
K. Reeves<br />
434. Ultrafast transient absorption and surface<br />
enhanced Raman of photosynthetic<br />
reaction centers linked to silver nanoparticles.<br />
S. J. Murphy, C. Postnikoff,<br />
P. V. Kamat, L. Huang<br />
435. Design and properties of iron based<br />
photosensitizers for dye-sensitized solar<br />
cells. F. A. Jove, Y. Chou, B. B. Wayland,<br />
H. Dai<br />
436. Large, stable graphene quantum dots<br />
with tunable size and energy levels. B. Li,<br />
X. Yan, X. Cui, L. Li<br />
437. Influence of pore loading and pore<br />
shape on the properties of ionic liquids<br />
confined inside nanoporous carbons.<br />
J. D. Monk,F.R.Hung<br />
438. Electrochemical preparation of p-type<br />
ternary metal oxides for solar energy conversion.<br />
C. G. Read,K.Choi<br />
439. 2D Fourier transform spectroscopy of<br />
light harvesting complex II.<br />
S. M. Wichner, P. D. Long, G. S. Engel<br />
440. Light harvesting mechanisms: Excitonphonon<br />
coupling in thiophene macrocycles<br />
at low temperature. D. Flynn,<br />
T. Goodson<br />
441. Energy relaxation dynamics of self-assembled<br />
porphyrin macrocycles.<br />
J. E. Donehue, T. Goodson, Z. S. Yoon<br />
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