bbc 2015

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10th Benelux Bioinformatics Conference bbc 2015 O18 SPATIAL CO-EXPRESSION ANALYSIS OF STEROID RECEPTORS IN THE MOUSE BRAIN IDENTIFIES REGION-SPECIFIC REGULATION MECHANISMS O19 A SYSTEMS BIOLOGY COMPENDIUM FOR LEISHMANIA DONOVANI 39 O20 MULTI-OMICS INTEGRATION: RIBOSOME PROFILING APPLICATIONS 40 O21 CLUB-MARTINI: SELECTING FAVORABLE INTERACTIONS AMONGST AVAILABLE CANDIDATES: A COARSE-GRAINED SIMULATION APPROACH TO SCORING DOCKING DECOYS O22 PEPSHELL: VISUALIZATION OF CONFORMATIONAL PROTEOMICS DATA 42 O23 INTERACTIVE VCF COMPARISON USING SPARK NOTEBOOK 43 O24 3D HOTSPOTS OF RECURRENT RETROVIRAL INSERTIONS REVEAL LONG-RANGE INTERACTIONS WITH CANCER GENES Poster presentations 38 41 44 P1 KNN-MDR APPROACH FOR DETECTING GENE-GENE INTERACTIONS 45 P2 CONSERVATION AND DIVERSITY OF SUGAR-RELATED CATABOLIC PATHWAYS IN FUNGI 46 P3 VISUALIZING BIOLOGICAL DATA THROUGH WEB COMPONENTS USING POLIMERO AND POLIMERO-BIO P4 DISEASE-SPECIFIC NETWORK CONSTRUCTION BY SEED-AND-EXTEND 48 P5 P6 BIG DATA SOLUTIONS FOR VARIANT DISCOVERY FROM LOW COVERAGE SEQUENCING DATA, BY INTEGRATION OF HADOOP, HBASE AND HIVE ENTEROCOCCUS FAECIUM GENOME DYNAMICS DURING LONG-TERM PATIENT GUT COLONIZATION P7 XCMS OPTIMISATION IN HIGH-THROUGHPUT LC-MS QC 51 P8 IDENTIFICATION OF NUMTS THROUGH NGS DATA 52 P9 MICROBIAL SEMANTICS: GENOME-WIDE HIGH-PRECISION NAMING SCHEMES FOR BACTERIA 53 P10 P11 FROM SNPS TO PATHWAYS: AN APPROACH TO STRENGTHEN BIOLOGICAL INTERPRETATION OF GWAS RESULTS IDENTIFICATION OF TRANSCRIPTION FACTOR CO-ASSOCIATIONS IN SETS OF FUNCTIONALLY RELATED GENES P12 PHENETIC: MULTI-OMICS DATA INTERPRETATION USING INTERACTION NETWORKS 56 P13 THE ROLE OF HLA ALLELES UNDERLYING CYTOMEGALOVIRUS SUSCEPTIBILITY IN ALLOGENEIC TRANSPLANT POPULATIONS P14 NOVOPLASTY: IN SILICO ASSEMBLY OF PLASTID GENOMES FROM WHOLE GENOME NGS DATA 58 P15 ENANOMAPPER - ONTOLOGY, DATABASE AND TOOLS FOR NANOMATERIAL SAFETY EVALUATION P16 BIOMEDICAL TEXT MINING FOR DISEASE-GENE DISCOVERY: SOMETIMES LESS IS MORE 60 P17 TUNESIM - TUNABLE VARIANT SET SIMULATOR FOR NGS READS 61 P18 P19 P20 RNA-SEQ REVEALS ALTERNATIVE SPLICING WITH ALTERNATIVE FUNCTIONALITY IN MUSHROOMS MSQROB: AN R/BIOCONDUCTOR PACKAGE FOR ROBUST RELATIVE QUANTIFICATION IN LABEL- FREE MASS SPECTROMETRY-BASED QUANTITATIVE PROTEOMICS A MIXTURE MODEL FOR THE OMICS BASED IDENTIFICATION OF MONOALLELICALLY EXPRESSED LOCI AND THEIR DEREGULATION IN CANCER P21 GEVACT: GENOMIC VARIANT CLASSIFIER TOOL 65 P22 MAPPI-DAT: MANAGEMENT AND ANALYSIS FOR HIGH THROUGHPUT INTERACTOMICS DATA FROM ARRAY-MAPPIT EXPERIMENTS P23 HIGHLANDER: VARIANT FILTERING MADE EASIER 67 14 47 49 50 54 55 57 59 62 63 64 66
10th Benelux Bioinformatics Conference bbc 2015 P24 P25 P26 P27 P28 DOSE-TIME NETWORK IDENTIFICATION: A NEW METHOD FOR GENE REGULATORY NETWORK INFERENCE FROM GENE EXPRESSION DATA WITH MULTIPLE DOSES AND TIME POINTS IDENTIFICATION OF NOVEL ALLOSTERIC DRUG TARGETS USING A “DUMMY” LIGAND APPROACH PASSENGER MUTATIONS CONFOUND INTERPRETATION OF ALL GENETICALLY MODIFIED CONGENIC MICE DETECTING MIXED MYCOBACTERIUM TUBERCULOSIS INFECTION AND DIFFERENCES IN DRUG SUSCEPTIBILITY WITH WGS DATA APPLICATION OF HIGH-THROUGHPUT SEQUENCING TO CIRCULATING MICRORNAS REVEALS NOVEL BIOMARKERS FOR DRUG-INDUCED LIVER INJURY P29 INFORMATION THEORETIC MODEL FOR GENE PRIORITIZATION 73 P30 GALAHAD: A WEB SERVER FOR THE ANALYSIS OF DRUG EFFECTS FROM GENE EXPRESSION DATA 74 P31 KMAD: KNOWLEDGE BASED MULTIPLE SEQUENCE ALIGNMENT FOR INTRINSICALLY DISORDERED PROTEINS P32 ON THE LZ DISTANCE FOR DEREPLICATING REDUNDANT PROKARYOTIC GENOMES 76 P33 THE ROLE OF MIRNAS IN ALZHEIMER’ S DISEASE 77 P34 FUNCTIONAL SUBGRAPH ENRICHMENTS FOR NODE SETS IN REGULATORY NETWORKS 78 P35 HUMANS DROVE THE INTRODUCTION & SPREAD OF MYCOBACTERIUM ULCERANS IN AFRICA 79 P36 LEVERAGING AGO-SRNA AFFINITY TO IMPROVE IN SILICO SRNA DETECTION AND CLASSIFICATION IN PLANTS P37 ANALYSIS OF RELATIONSHIP PATTERNS IN UNASSIGNED MS/MS SPECTRA 81 P38 MINING ACROSS “ OMICS ” DATA FOR DRUG PRIORITIZATION 82 P39 P40 ABUNDANT TRANS-SPECIFIC POLYMORPHISM AND A COMPLEX HISTORY OF NON-BIFURCATING SPECIATION IN THE GENUS ARABIDOPSIS RIBOSOME PROFILING ENABLES THE DISCOVERY OF SMALL OPEN READING FRAMES (SORFS), A NEW SOURCE OF BIOACTIVE PEPTIDES P41 RIGAPOLLO, A HMM-SVM BASED APPROACH TO SEQUENCE ALIGNMENT 85 P42 EARLY FOLDING AND LOCAL INTERACTIONS 86 P43 P44 BINDING SITE SIMILARITY DRUG REPOSITIONING: A GENERAL AND SYSTEMATIC METHOD FOR DRUG DISCOVERY AND SIDE EFFECTS DETECTION ASSESSMENT OF THE CONTRIBUTION OF COCOA-DERIVED STRAINS OF ACETOBACTER GHANENSIS AND ACETOBACTER SENEGALENSIS TO THE COCOA BEAN FERMENTATION PROCESS THROUGH A GENOMIC APPROACH P45 REPRESENTATIONAL POWER OF GENE FEATURES FOR FUNCTION PREDICTION 89 P46 ANALYSIS OF BIAS AND ASYMMETRY IN THE PROTEIN STABILITY PREDICTION 90 P47 P48 MULTI-LEVEL BIOLOGICAL CHARACTERIZATION OF EXOMIC VARIANTS AT THE PROTEIN LEVEL IMPROVES THE IDENTIFICATION OF THEIR DELETERIOUS EFFECTS NGOME: PREDICTION OF NON-ENZYMATIC PROTEIN DEAMIDATION FROM SEQUENCE-DERIVED SECONDARY STRUCTURE AND INTRINSIC DISORDER P49 OPTIMAL DESIGN OF SRM ASSAYS USING MODULAR EMPIRICAL MODELS 93 P50 P51 EVALUATING THE ROBUSTNESS OF LARGE INDEL IDENTIFICATION ACROSS MULTIPLE MICROBIAL GENOMES INTEGRATING STRUCTURED AND UNSTRUCTURED DATA SOURCES FOR PREDICTING CLINICAL CODES P52 SUPERVISED TEXT MINING FOR DISEASE AND GENE LINKS 96 P53 FLOWSOM WEB: A SCALABLE ALGORITHM TO VISUALIZE AND COMPARE CYTOMETRY DATA IN THE BROWSER P54 TOWARDS A BELGIAN REFERENCE SET 98 P55 MANAGING BIG IMAGING DATA FROM MICROSCOPY: A DEPARTMENTAL-WIDE APPROACH 99 15 68 69 70 71 72 75 80 83 84 87 88 91 92 94 95 97
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