Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
A rule of thumb for determining the D/L isomeric form of an amino acid is the “CORN” rule. The<br />
groups:<br />
COOH, R, NH 2<br />
and H (where R is a variant carbon chain)<br />
are arranged around the chiral center carbon atom. Sighting with the hydrogen atom away from<br />
the viewer, if these groups are arranged clockwise around the carbon atom, then it is the D-form.<br />
If counter-clockwise, it is the L-form.<br />
Properties of enantiomers<br />
Normally, the two enantiomers of a molecule behave identically to each other. For example,<br />
they will migrate with identical Rf in thin layer chromatography and have identical retention<br />
time in HPLC. Their NMR and IR spectra are identical. However, enantiomers behave differently<br />
in the presence of other chiral molecules or objects. For example, enantiomers do not migrate<br />
Nomenclature<br />
• Any non-racemic chiral substance is called scalemic.<br />
• A chiral substance is enantiopure or homochiral when only one of two possible enantiomers<br />
is present.<br />
• A chiral substance is enantioenriched or heterochiral when an excess of one enantiomer is<br />
present but not to the exclusion of the other.<br />
• Enantiomeric excess or ee is a measure for how much of one enantiomer is present compared<br />
to the other. For example, in a sample with 40% ee in R, the remaining 60% is racemic with<br />
30% of R and 30% of S, so that the total amount of R is 70%.<br />
Stereogenic centers<br />
In general, chiral molecules have point chirality at a single stereogenic atom, usually carbon,<br />
which has four different substituents. The two enantiomers of such compounds are said to have<br />
different absolute configurations at this center. This center is thus stereogenic (i.e., a grouping<br />
within a molecular entity that may be considered a focus of stereoisomerism).<br />
Normally when an atom has four different substituents, it is chiral. However in rare cases, two of<br />
the ligands differ from each other by being mirror images of each other. When this happens, the<br />
mirror image of the molecule is identical to the original, and the molecule is achiral. This is called<br />
pseudochirality.<br />
A molecule can have multiple chiral centers without being chiral overall if there is a symmetry<br />
between the two (or more) chiral centers themselves. Such a molecule is called a meso compound.<br />
It is also possible for a molecule to be chiral without having actual point chirality. Common<br />
examples include 1,1’-bi-2-naphthol (BINOL) and 1,3-dichloro-allene, which have axial chirality,<br />
(E)-cyclooctene, which has planar chirality, and certain calixarenes and fullerenes, which have<br />
inherent chirality.<br />
It is important to keep in mind that molecules have considerable flexibility and thus, depending<br />
on the medium, may adopt a variety of different conformations. These various conformations are<br />
themselves almost always chiral. When assessing chirality, a time-averaged structure is considered<br />
and for routine compounds, one should refer to the most symmetric possible conformation.<br />
When the optical rotation for an enantiomer is too low for practical measurement, it is said to<br />
exhibit cryptochirality.<br />
Even isotopic differences must be considered when examining chirality. Replacing one of the<br />
two 1H atoms at the CH2 position of benzyl alcohol with a deuterium (²H) makes that carbon a<br />
stereocenter. The resulting benzyl-α-d alcohol exists as two distinct enantiomers, which can be<br />
assigned by the usual stereochemical naming conventions. The S enantiomer has [α]D = +0.715°.<br />
identically on chiral chromatographic media, such as quartz or standard media that have been<br />
chirally modified. The NMR spectra of enantiomers are affected differently by single-enantiomer<br />
chiral additives such as Eufod.<br />
Chiral compounds rotate plane polarized light. Each enantiomer will rotate the light in a different<br />
sense, clockwise or counterclockwise. Molecules that do this are said to be optically active.<br />
Chacteristically, different enantiomers of chiral compounds often taste and smell differently and<br />
have different effects as drugs – see below. These effects reflect the chirality inherent in biological<br />
systems.<br />
One chiral ‘object’ that interacts differently with the two enantiomers of a chiral compound is<br />
circularly polarised light: An enantiomer will absorb left- and right-circularly polarised light to<br />
differing degrees. This is the basis of circular dichroism (CD) spectroscopy. Usually the difference<br />
in absorptivity is relatively small (parts per thousand). CD spectroscopy is a powerful analytical<br />
technique for investigating the secondary structure of proteins and for determining the absolute<br />
configurations of chiral compounds, in particular, transition metal complexes. CD spectroscopy is<br />
replacing polarimetry as a method for characterising chiral compounds, although the latter is still<br />
popular with sugar chemists.<br />
In biology<br />
Many biologically active molecules are chiral, including the naturally occurring amino acids (the<br />
building blocks of proteins), and sugars. In biological systems, most of these compounds are of<br />
62 63