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INDEX 485 Transcription factors, 48, 59 MAP kinase phosphorylation, 268 Transcriptome analysis, 17 Transferrin receptors, 101–2 Translation, 70 control, 70, 85 Transposon mutagenesis, 117–18 Trehalase, 330, 341 Trehalose, 6-phosphate phosphatase, 341 Trehalose, 6-phosphate synthase, 341 Trehalose, 323 energy metabolism, 341 Trematodes, 438 chemotherapy, 458–60 developmental biology, 305, 309–10 excretion, 308, 310 gastrodermis (gastrovascular cavity), 302–3, 309–11 immune evasion, 305–6, 310–11 inorganic ion transport, 308, 310 mating patterns, 308–9 nervous system, 385, 386 neurotransmitters, 384, 387–92 nutrient absorption, 306–7, 310 protonephridial (flame cell) system, 303, 311 purine/pyrimidine transport, 206 tegument, 297, 302 biochemistry/molecular biology, 304–5 functions, 305–9 osmoregulation, 307–8 signal transduction, 308–9 structure, 303–4 vaccine development, 303 Trichinella,23 Trichinella spiralis: cuticle, 314 excretion, 326 host interactions, 312 mitochondrial genomics, 25 Trichlorfon (metrifonate), 367, 389 Trichocephalid nematode genome, 23 Trichomonas, 125 Trichomonas vaginalis, 125, 395, 423–6, 437 amino acid metabolism, 184, 185, 186, 188 aminotransferases, 182 glutamate dehydrogenases, 182 amino acid transport, 173 amitochondriate state, 283, 284 chemotherapy, 424, 453–4 drug resistance, 135, 424–5 energy metabolism, 127, 128, 130, 131, 133, 134, 136, 424 hydrogenosome, 424 polyamines synthesis, 191 proteolytic enzymes, 176, 181 purine metabolism, 216–17 pyrimidine metabolism, 198, 221–2 transport, 206 SERCA calcium pumps, 246 transcription: -amanitin-resistant, 49, 50 protein coding genes, 56–7 Trichostrongylus, 456 Trichostrongylus colubriformis: anhydrobiotic survival, 321 energy metabolism, 347 nutrient absorption, 318 Trichuris,23 Trichuris muris, 222 Trichuris trichiura: chemotherapy, 456, 457 clinical aspects, 455 Triclabendazole, 458, 459 Triosephosphate isomerase, 130, 143 Plasmodium falciparum, 159 trypanosomes, 146 Tritrichomonas, 125 Tritrichomonas foetus, 125 amino acid metabolism, 184 energy metabolism, 127, 128, 130, 131, 134 proteolytic enzymes, 176 purine metabolism, 215–16 pyrimidine metabolism, 198, 221 Trypanopain, 174 Trypanosoma brucei, 73, 91 acidocalcisomes, 249 adenylyl cyclases, 259, 260 functional aspects, 261–2 amino acid metabolism, 185, 187 catabolism, 183 uptake, 172, 173 Ca 2 metabolism, 243, 247, 250, 251 SERCA calcium pumps, 246, 247 calcium-binding proteins, 251, 252, 253 cAMP-dependent protein kinase (PKA), 261 CDK-related kinases (CRKs), 271 coxII RNA editing, 38 elongation factor-1 (EF-1), 252 energy metabolism, 74, 143–4, 145, 146, 147, 148, 150, 151 therapeutic targets, 143, 146–7
486 INDEX genome, 21 survey sequences (GSS), 10 host immune response, 104 innate resistance, 105 laboratory studies, 91 mitogen-activated protein (MAP) kinases, 268, 269, 270 phosphoglycerate kinase (PGK) posttranscriptional regulation, 74–5 polyamines synthesis, 189, 190, 191 procyclins, see Procyclins promoter structures, 52, 53 proteasome, 85, 177, 178, 180 protein phosphatases, 274 proteolytic enzymes, 174, 176, 177 proto-apoptosis, 227 purine metabolism, 204–5, 215 pyrimidine metabolism, 204–5, 221 RNA degradation, 78–80, 84 RNA editing, 38, 39, 43 RNA pol I, 56 RNA 3-untranslated regions, 78–80 spliced leader (SL) RNA gene promoter, 61 surface coat structure, 91 T. rhodesiense/T. gambiense genetic exchange, 105 telomeres, 100 transcription: class I genes, 50–1 class II genes, 57 major cell surface antigens, 49–50 promoter DNA-protein interactions, 54–5 regulation, 51 termination, 55 U2 snRNA genes, 63 transferrin receptors, 101 translation control, 85 variant surface glycoproteins (VSGs), see Variant surface glycoprotein (VSG) VSG genes, 97, 102–3 Trypanosoma brucei brucei, 140 chemotherapy, 419 polyamines synthesis, 191 purine metabolism, 215 Trypanosoma brucei gambiense, 91, 104, 105, 140, 397, 437 chemotherapy, 418, 419, 420, 421, 448–50 clinical aspects, 448 drug resistance, 421 polyamines synthesis, 189 purine metabolism, 215 T. rhodesiense genetic exchange, 105 Trypanosoma brucei rhodesiense, 91, 104–5, 140, 397, 437 chemotherapy, 418, 419, 421, 448–50 clinical aspects, 448 drug resistance, 421 glucose transporters, 144 polyamines synthesis, 191 purine metabolism, 215 T. gambiense genetic exchange, 105 Trypanosoma congolense,91 chemotherapy, 419 proteolytic enzymes, 174, 176 variant surface glycoproteins (VSGs), 95, 96 Trypanosoma cruzi, 73, 74, 397, 437 acidocalcisomes, 249, 250 adenylyl cyclases, 259, 260 functional aspects, 262 amino acid metabolism, 188, 190, 191, 192 catabolism, 187 glutamate dehydrogenases, 182 transport, 173 Ca 2 metabolism, 247, 248, 250, 251 SERCA calcium pumps, 246 calcium signaling, 256 calcium-binding proteins, 251, 252, 253, 254 calreticulin, 245 chemotherapy, 422–3, 446–8 clinical aspects, 446–7 energy metabolism, 146 therapeutic targets, 146–7 genome, 20, 21 invasion processes, 256 lipopeptidophosphoglycan, 230–1 mitogen-activated protein (MAP) kinases, 268 promoter structures, 54 proteasome, 177, 180 protein phosphatases, 274 proteolytic enzymes, 174, 176, 177, 180 therapeutic targets, 181, 182 purine metabolism, 214–15 transport, 204 pyrimidine metabolism, 221 RNA degradation regulation, 77 RNA post-transcriptional regulation, 79, 81 SIRE transposable element, 76 surface mucins, 225, 228–30 function, 230 mucin genes, 79, 228 structure, 228–30
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Molecular Medical Parasitology
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Molecular Medical Parasitology Edit
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Contents List of contributors Prefa
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List of contributors Mark Blaxter,
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LIST OF CONTRIBUTORS ix Richard. J.
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Preface Parasitology was born as th
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S E C T I O N I MOLECULAR BIOLOGY
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C H A P T E R 1 Parasite genomics M
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TABLE 1.1 Parasite genomes: genome
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GENERATING GENOMICS DATA 7 differen
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GENERATING GENOMICS DATA 9 TABLE 1.
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GENERATING GENOMICS DATA 11 called
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GENERATING GENOMICS DATA 13 200 000
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BIOINFORMATICS AND THE ANALYSIS OF
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THE POST-GENOMICS ERA, AND THE OTHE
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THE PARASITES AND THEIR GENOMES 19
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FURTHER READING 27 treated with a d
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C H A P T E R 2 RNA processing in p
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TRANS-SPLICING 31 cis trans Exon 1
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TRANS-SPLICING 33 snRNPs (small nuc
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TRANS-SPLICING 35 trans cis U2AF35
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RNA EDITING 37 P AAAA... AAAA... AA
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RNA EDITING 39 entire transcript re
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RNA EDITING 41 5 Editing block C Ed
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RNA EDITING 43 microscopy) approach
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FURTHER READING 45 Nilsen, T.W. (19
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C H A P T E R 3 Transcription Arthu
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UNUSUAL MODES OF TRANSCRIPTION IN T
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CLASS I TRANSCRIPTION IN TRYPANOSOM
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CLASS II TRANSCRIPTION OF PROTEIN C
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SL RNA AND U snRNA GENE TRANSCRIPTI
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FURTHER READING 65 and switching in
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C H A P T E R 4 Post-transcriptiona
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POST-TRANSCRIPTIONAL REGULATION IN
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FURTHER READING 87 inhibition, it m
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C H A P T E R 5 Antigenic variation
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ANTIGENIC VARIATION AT THE STRUCTUR
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ANTIGENIC VARIATION AT THE STRUCTUR
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VSG Signal sequence Amino-terminal
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GENETICS OF ANTIGENIC VARIATION 97
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IMMUNE RESPONSES TO TRYPANOSOME INF
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INNATE RESISTANCE, HUMAN SUSCEPTIBI
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ANTIGENIC VARIATION IN MALARIA 107
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FURTHER READING 109 ACKNOWLEDGEMENT
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C H A P T E R 6 Genetic and genomic
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‘FORWARD’ VS. ‘REVERSE’ GEN
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EXAMPLES OF ‘FORWARD’ GENETIC A
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EXAMPLES OF ‘FORWARD’ GENETIC A
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REVERSE GENETICS AND LEISHMANIA VIR
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VALIDATION OF CANDIDATE VIRULENCE G
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S E C T I O N II BIOCHEMISTRY AND C
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C H A P T E R 7 Energy metabolism P
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SUBCELLULAR ORGANIZATION OF AMITOCH
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CELL MEMBRANE Fructose [b] Glucose
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STEPS OF AMITOCHONDRIATE CORE METAB
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ENZYMATIC DIFFERENCES BETWEEN AMITO
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ACTION OF NITROIMIDAZOLE DRUGS 135
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ENVOI 137 unambiguously reflect the
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FURTHER READING 139 Saavedra-Lira,
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THE EMBDEN-MEYERHOF-PARNAS (EMP) PA
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WHY DO TRYPANOSOMATIDAE HAVE GLYCOS
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FURTHER READING 153 for use in agri
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CARBOHYDRATE METABOLISM 155 as a hu
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158 ENERGY METABOLISM - APICOMPLEXA
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172 PROTEIN METABOLISM PROTEINS (1)
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174 PROTEIN METABOLISM the C-termin
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176 PROTEIN METABOLISM and also, to
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178 PROTEIN METABOLISM values rangi
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180 PROTEIN METABOLISM of the plasm
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182 PROTEIN METABOLISM in vivo, in
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184 PROTEIN METABOLISM PROLINE Poly
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186 PROTEIN METABOLISM CO 2 Dec-SAM
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188 PROTEIN METABOLISM a cMDH has b
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190 PROTEIN METABOLISM Urea ARGININ
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192 PROTEIN METABOLISM been describ
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194 PROTEIN METABOLISM absence of g
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198 PURINES AND PYRIMIDINES enable
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200 PURINES AND PYRIMIDINES provide
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202 PURINES AND PYRIMIDINES activit
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204 PURINES AND PYRIMIDINES physiol
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206 PURINES AND PYRIMIDINES Amitoch
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208 PURINES AND PYRIMIDINES their a
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210 PURINES AND PYRIMIDINES FIGURE
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214 PURINES AND PYRIMIDINES protein
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220 PURINES AND PYRIMIDINES in Plas
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222 PURINES AND PYRIMIDINES whereas
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226 TRYPANOSOMATID CARBOHYDRATES AF
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228 TRYPANOSOMATID CARBOHYDRATES In
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230 TRYPANOSOMATID CARBOHYDRATES po
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232 TRYPANOSOMATID CARBOHYDRATES LP
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234 TRYPANOSOMATID CARBOHYDRATES re
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236 TRYPANOSOMATID CARBOHYDRATES sc
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A. sAP COOH [T][T](S/T)(S/T)(S/T)SS
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240 TRYPANOSOMATID CARBOHYDRATES Cr
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242 INTRACELLULAR SIGNALING protein
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244 INTRACELLULAR SIGNALING FIGURE
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246 INTRACELLULAR SIGNALING 212.5 2
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248 INTRACELLULAR SIGNALING cycle.
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250 INTRACELLULAR SIGNALING V-H -A
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252 INTRACELLULAR SIGNALING domain)
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254 INTRACELLULAR SIGNALING the kno
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256 INTRACELLULAR SIGNALING from in
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258 INTRACELLULAR SIGNALING FIGURE
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260 INTRACELLULAR SIGNALING ESAG4 (
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262 INTRACELLULAR SIGNALING and ind
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264 INTRACELLULAR SIGNALING ATPase
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266 INTRACELLULAR SIGNALING G11XG
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268 INTRACELLULAR SIGNALING a diffe
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270 INTRACELLULAR SIGNALING rapid l
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272 INTRACELLULAR SIGNALING cells w
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274 INTRACELLULAR SIGNALING PfPPJ i
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276 INTRACELLULAR SIGNALING is cont
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278 PLASTIDS, MITOCHONDRIA, AND HYD
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298 HELMINTH SURFACES Important exc
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300 HELMINTH SURFACES protease inhi
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302 HELMINTH SURFACES volume, there
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304 HELMINTH SURFACES projecting si
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306 HELMINTH SURFACES schistosome t
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308 HELMINTH SURFACES re-establish
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310 HELMINTH SURFACES hepatic cells
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312 HELMINTH SURFACES lungs. Larvae
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314 HELMINTH SURFACES cuticle, whic
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316 HELMINTH SURFACES cuticle in th
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318 HELMINTH SURFACES mec-8 or sym-
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320 HELMINTH SURFACES current, when
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322 HELMINTH SURFACES The cuticle-h
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324 HELMINTH SURFACES are typically
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326 HELMINTH SURFACES or carrier pr
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328 HELMINTH SURFACES of tyrosine-b
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330 HELMINTH SURFACES blood. The ge
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332 HELMINTH SURFACES Mutations in
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334 HELMINTH SURFACES in the hypode
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336 HELMINTH SURFACES (including H-
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338 HELMINTH SURFACES Blaxter, M.L.
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340 ENERGY METABOLISM IN HELMINTHS
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360 NEUROTRANSMITTERS CO 2 H NH 2 G
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362 NEUROTRANSMITTERS TABLE 15.1 An
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364 NEUROTRANSMITTERS more arms tha
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366 NEUROTRANSMITTERS the surroundi
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368 NEUROTRANSMITTERS proteins requ
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370 NEUROTRANSMITTERS FIGURE 15.11
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372 NEUROTRANSMITTERS FIGURE 15.13
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374 NEUROTRANSMITTERS sensitivity t
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376 NEUROTRANSMITTERS TABLE 15.3 Cl
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378 NEUROTRANSMITTERS crossed the c
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380 NEUROTRANSMITTERS have been tes
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382 NEUROTRANSMITTERS C-terminals a
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384 NEUROTRANSMITTERS Davis and Str
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386 NEUROTRANSMITTERS Cephalic gang
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388 NEUROTRANSMITTERS myoexcitation
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390 NEUROTRANSMITTERS is phosphoryl
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392 NEUROTRANSMITTERS many other an
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398 DRUG RESISTANCE of some of the
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400 DRUG RESISTANCE It is now estim
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402 DRUG RESISTANCE is again assume
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404 DRUG RESISTANCE An alternative
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406 DRUG RESISTANCE clinical eviden
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408 DRUG RESISTANCE FIGURE 16.4 Fol
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410 DRUG RESISTANCE Using similar s
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412 DRUG RESISTANCE whether these r
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414 DRUG RESISTANCE FIGURE 16.5 Str
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416 DRUG RESISTANCE FIGURE 16.6 Try
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418 DRUG RESISTANCE has permitted e
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420 DRUG RESISTANCE FIGURE 16.7 Dru
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422 DRUG RESISTANCE near future. Th
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424 DRUG RESISTANCE million new inf
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426 DRUG RESISTANCE some 50 million
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428 DRUG RESISTANCE pharynx, the bo
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430 DRUG RESISTANCE efforts for glo
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432 DRUG RESISTANCE and resistance
Page 447 and 448: 434 MEDICAL IMPLICATIONS TABLE 17.1
Page 449 and 450: 436 MEDICAL IMPLICATIONS TABLE 17.1
Page 451 and 452: 438 MEDICAL IMPLICATIONS transmissi
Page 453 and 454: 440 MEDICAL IMPLICATIONS H 2 C H H
Page 455 and 456: 442 MEDICAL IMPLICATIONS parasites
Page 457 and 458: 444 MEDICAL IMPLICATIONS neuropsych
Page 459 and 460: 446 MEDICAL IMPLICATIONS of toxic f
Page 461 and 462: 448 MEDICAL IMPLICATIONS Future con
Page 463 and 464: 450 MEDICAL IMPLICATIONS Melarsopro
Page 465 and 466: 452 MEDICAL IMPLICATIONS prevention
Page 467 and 468: 454 MEDICAL IMPLICATIONS resulting
Page 469 and 470: 456 MEDICAL IMPLICATIONS for S. ste
Page 471 and 472: 458 MEDICAL IMPLICATIONS are though
Page 473 and 474: 460 MEDICAL IMPLICATIONS FIGURE 17.
Page 475 and 476: 462 MEDICAL IMPLICATIONS Marr, J.J.
Page 477 and 478: 464 INDEX Aldolase, 143 Plasmodium
Page 479 and 480: 466 INDEX Ascofuranone, 143 ASCUT-1
Page 481 and 482: 468 INDEX Cnidarians, RNA trans-spl
Page 483 and 484: 470 INDEX Entamoeba, 125 Ca 2 metab
Page 485 and 486: 472 INDEX Glucose-6-phosphate dehyd
Page 487 and 488: 474 INDEX Ivermectin, 398, 427, 455
Page 489 and 490: 476 INDEX Maduramicin, 412 Major va
Page 491 and 492: 478 INDEX Nitric oxide: neurotransm
Page 493 and 494: 480 INDEX calcium-binding proteins,
Page 495 and 496: 482 INDEX Pyrimidine transport, 200
Page 497: 484 INDEX Succinate:rhodoquinone ox
Page 501: 488 INDEX U small nuclear RNA (snRN
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