MOPEX User's Guide - IRSA

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MOPEX User’s Guide Table 9.7: List of options that can be called from the command line when running prf_estimate.pl Option Flag Specification File (example) Default Location Required/Optional -n namelist of input parameters (prf_estimate.nl) -I (capital i) list of input images (if running on a stack of images) (ImageList.txt) -i input image name (if running on a single image) (mosaic.fits) -E Point Source List (mips24_extract.tbl) -M permanently damaged pixel mask image (pmask.fits) ./cdf/ required ./ required ./ optional ./ optional ./cal/ optional -F Fiducial Image Frame file (FIF.tbl) .// optional -d list of DCE status mask images (BMaskList.txt) -R list of outlier rejection mask (RMask) images (RMaskList.txt) ./ optional ./ optional -O Output directory ./ optional Running MOPEX on the Command Line 236 Running PRF Estimate on the command line
Appendix A. Full List of MOPEX Scripts Running MOPEX on the Command Line MOPEX User’s Guide Here is a full list of all of the scripts available in MOPEX. Some of them are not available in the GUI, and so can only be run from the command-line. For the command-line only scripts, the documentation can be found in the given README files, which can be found in the readme/ directory of your MOPEX distribution. The scripts included with MOPEX are split into "Supported" and "Under Construction". Supported scripts are verified and fully supported, and are split into "Commonly Used" and "Auxiliary" scripts. Those under construction are either unfinished or have not been verified, and are used entirely at the user's risk. We do not support scripts under construction. A.1 Supported Scripts A.1.1 Commonly Used Tool Description GUI? Documentation aperture.pl Computes aperture fluxes N aperture.pdf apex.pl / apex_1frame.pl Performs multiframe / single frame point source extraction apex_user_list.pl / apex_user_list_1frame.pl Carries out multiframe / single frame point source extraction on a user-defined source list. Y This manual, Chapter 6 Y This manual, Chapter 6 apex_qa.pl Creates point source subtracted mosaic Y This manual, Chapter 6 cosmetic.pl For IRAC data only; removes muxbleed and column pull-down artifacts in IRAC images. Superceded by Sean Carey's IDL code, available as Contributed Software. fiducial_frame.pl Creates mosaic projection table. N -- flatfield.pl Performs final flatfielding. Not recommended for use with IRAC data mosaic.pl For mosaicking the BCDs with/without outlier detection mosaic_sed.pl Performs interpolation and coadition of MIPS SED (spectral energy distribution) images, and extraction N README_cosmetic (txt) N README_flatfield (txt) Y This manual Chapter 5 N mosaic_sed.pdf Running PRF Estimate on the command line
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MOPEX User’s Guide MOsaicking and
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MOPEX User’s Guide Chapter 4. Ove
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MOPEX User’s Guide 7.4 PRF Estima
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Chapter 1. Introduction MOPEX User
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MOPEX User’s Guide • If you are
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for Linux and Solaris systems, and:
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Chapter 2. Overview of MOPEX MOPEX
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For instructions on how to run MOPE
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2.3.1 Additional Functionality MOPE
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MOPEX User’s Guide mosaic_mask.pl
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MOPEX User’s Guide Choosing the r
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MOPEX User’s Guide photometry), o
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Chapter 3. MOPEX Input MOPEX User
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3.2 MOPEX Input List Files MOPEX Us
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Chapter 4. Overlap (overlap.pl) MOP
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MOPEX User’s Guide 3. Background
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MOPEX User’s Guide Output Directo
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ncpu_multiprocess = 1 default = 1 I
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4.3.3 Overlap Modules: S/N Estimato
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σ = σ 2 readnoise g 2 + σ 2 conf
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MOPEX User’s Guide Generated Head
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OUTPUT MOPEX User’s Guide Generat
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OUTPUT MOPEX User’s Guide Generat
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MOPEX User’s Guide When choosing
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MOPEX User’s Guide offsets and th
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Chapter 5. Mosaicking (mosaic.pl) M
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MOPEX User’s Guide They do not ne
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MOPEX User’s Guide interpolated u
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MOPEX User’s Guide more informati
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MOPEX User’s Guide Pixel by Size:
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OUTPUT None DISCUSSION MOPEX User
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MOPEX User’s Guide This module al
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MOPEX User’s Guide negative numbe
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DISCUSSION MOPEX User’s Guide For
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MOPEX User’s Guide then interpola
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MOPEX User’s Guide This module pe
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DISCUSSION MOPEX User’s Guide Mos
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PURPOSE MOPEX User’s Guide This m
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DISCUSSION No further information.
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MOPEX User’s Guide processed in o
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MOPEX User’s Guide Min Pix Number
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MOPEX User’s Guide Box Median Bia
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MOPEX User’s Guide If coverage >=
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MOPEX User’s Guide Refine Outlier
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MOPEX User’s Guide Reinterpolatio
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PURPOSE MOPEX User’s Guide The in
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MOPEX User’s Guide The tile speci
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MOPEX User’s Guide Standard Devia
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Mosaic Coverage File (mosaic_cov.fi
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There are no user-defined input par
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COMMAND LINE INPUT See INPUT. OUTPU
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MOPEX User’s Guide limitations di
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6.3 Running APEX MOPEX User’s Gui
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MOPEX User’s Guide Point Source D
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Figure 6.1: Overview of the main pr
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Relevant Pipelines: All PURPOSE INP
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NICE = 1 save_namelist = 1 MOPEX Us
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MOPEX User’s Guide Mosaic PRF Fil
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create_unc_mosaic = 1 use_std_to_de
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MOPEX User’s Guide Use Refined Po
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MOPEX User’s Guide Here FLUXCONV
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MOPEX User’s Guide This module cr
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MOPEX User’s Guide year) and with
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MOPEX User’s Guide Mosaic FIF Tab
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MOPEX User’s Guide Tile BCD file
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MOPEX User’s Guide Window X, Y: (
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MOPEX User’s Guide neighboring pi
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⎛ ⎜ ⎜ P( j) = ⎜ 1+ ⎜ ⎜
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&END MOPEX User’s Guide if use_ps
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MOPEX User’s Guide \float Tile_Of
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MOPEX User’s Guide Input Type: De
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MOPEX User’s Guide pixels set to
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MOPEX User’s Guide This module co
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MOPEX User’s Guide is recorded as
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&END OUTPUT MOPEX User’s Guide Th
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INPUT Columns selection: MOPEX User
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PURPOSE MOPEX User’s Guide Fits t
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MOPEX User’s Guide given below. O
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6.5.19 APEX Modules: Aperture Photo
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MOPEX User’s Guide This module al
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Condition Builder: Some simple sele
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MOPEX User’s Guide Fatal Mask Bit
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MOPEX User’s Guide Pixel by Size:
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MOPEX User’s Guide Mosaic PRF Fil
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PRF_ResampleX_Factor = 100, PRF_Res
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7.3 Running PRF Estimate MOPEX User
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MOPEX User’s Guide 3. Outlier Rej
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PURPOSE MOPEX User’s Guide Set up
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MOPEX User’s Guide Most users wil
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DISCUSSION MOPEX User’s Guide Wit
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7.5.5 PRF Estimate Modules: Split B
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MOPEX User’s Guide Fit Seed: (int
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Chapter 8. Basic Concepts in MOPEX
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8.2 Outlier Detection MOPEX User’
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MOPEX User’s Guide Figure 8.3: An
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