MOPEX User's Guide - IRSA

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• Create RMask Mosaic • Make Array Correction Files • Make Array Correction Mosaic 5.6.1 Mosaic Modules: Initial Setup Command Line Equivalent: N/A Default Output Directory: N/A De pe nds On: None PURPOSE INPUT Set up the input and output files for the loaded flow. MOPEX User’s Guide Image Stack File: The text file containing the list of input data files for the pipeline. Typically these are the *bcd.fits files that you download from the Spitzer data archive. See Chapter 3 and Table 3.1 for more information on the input file requirements and format. Output Directory: The directory that you want to set as your output directory for this run. Multi-processing Mode: Switch to use multi-processing. See Discussion. Processors for Multi-processing: Number of processors to use. See Discussion. Optional Input and Mask Files: Sigma List File: The text file containing the list of uncertainty images that correspond to the input data files (usually the *bunc.fits files; see Table 3.1 for more information). DCE Status Mask List: The text file containing the list of mask images that flag temporarily-bad pixels in the input data images. There should be a mask file for each of the input data files (these depend on the instrument, but will be labeled something like *msk.fits; see Table 3.1 for more information). Fatal Mask Bit Pattern: This is the bit pattern that defines which type of flagged problems that you wish to set as fatal when combining the input images. See §8.11 for Mosaicking (mosaic.pl) 50 Mosaic Modules
MOPEX User’s Guide more information. There is a separate Fatal Bit Pattern for each type of mask that is being used as input (i.e. for the DCE Status masks, the RMasks and the PMask). Rmask List File : The text file containing a list of outlier mask images. Usually this will be left blank, as the RMask images are created during the mosaicking process. This option allows you to specify a previously created list of RMask images as input on second and subsequent runs of the pipeline, to save having to re-generate them. Pmask FITS File: The permanently-damaged pixel mask for the detector. This is a single FITS image, flagging the permanently damaged pixels in the instrument arrays. These files are stored in the /cal/ directory. There is a single PMask for each of the MIPS and IRS channels, but the IRAC ones have changed with time. See the file /pmasks.README for information on which PMask is applicable to your data. Note that the date that the data were taken is given in the DATE_OBS header keyword (not DATE - this is the date the file was written). FIF file: The Fiducial Image Frame file (see §5.6.4). This is an optional input file, as it is often generated from the input data using the Fiducial Image Frame module. There are, however, a number of cases in which you might wish to use a user-specified FIF (e.g. if you are trying to match the field of view to the other data channels). COMMAND LINE INPUT The following are set in the Global Parameters part of the namelist: IMAGE_STACK_FILE_NAME = /imagelist.txt OUTPUT_DIR = /output SIGMALIST_FILE_NAME = /sigmalist.txt DCE_STATUS_MASK_LIST = /masklist.txt DCE_Status_Mask_Fatal_BitPattern = 32544 RMASK_LIST = /rmasklist.txt RMask_Fatal_BitPattern = 7 PMASK_FILE_NAME = /cal/sep07/sep07_ch1_bcd_pmask.fits PMask_Fatal_BitPattern = 32767 FIF_FILE_NAME = /FIF.tbl verbose = 1 NICE = 1 save_namelist = 1 Verbose, NICE and save_namelist are only available on the command line. See §9.4.2.3 for more information. Mosaicking (mosaic.pl) 51 Mosaic Modules
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MOPEX User’s Guide MOsaicking and
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MOPEX User’s Guide Chapter 4. Ove
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MOPEX User’s Guide Point Source D
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Figure 6.1: Overview of the main pr
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Relevant Pipelines: All PURPOSE INP
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NICE = 1 save_namelist = 1 MOPEX Us
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MOPEX User’s Guide Mosaic PRF Fil
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create_unc_mosaic = 1 use_std_to_de
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MOPEX User’s Guide Here FLUXCONV
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MOPEX User’s Guide This module cr
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MOPEX User’s Guide Mosaic FIF Tab
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MOPEX User’s Guide Tile BCD file
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MOPEX User’s Guide Window X, Y: (
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⎛ ⎜ ⎜ P( j) = ⎜ 1+ ⎜ ⎜
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MOPEX User’s Guide \float Tile_Of
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INPUT Columns selection: MOPEX User
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PURPOSE MOPEX User’s Guide Fits t
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MOPEX User’s Guide given below. O
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6.5.19 APEX Modules: Aperture Photo
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Condition Builder: Some simple sele
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PRF_ResampleX_Factor = 100, PRF_Res
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7.3 Running PRF Estimate MOPEX User
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MOPEX User’s Guide 3. Outlier Rej
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PURPOSE MOPEX User’s Guide Set up
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MOPEX User’s Guide Most users wil
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DISCUSSION MOPEX User’s Guide Wit
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7.5.5 PRF Estimate Modules: Split B
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MOPEX User’s Guide Fit Seed: (int
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Chapter 8. Basic Concepts in MOPEX
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8.2 Outlier Detection MOPEX User’
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MOPEX User’s Guide Two ways to es
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8.3.2 Thresholding MOPEX User’s G
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T cl = P min − T min SegLevel MOP
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Centroid _ X = ∑ i∈cluster X(i)
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z n = ∑ r(r≠n ) Onr(I n − Ir
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MOPEX User’s Guide Table 9.6: Lis
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Appendix A. Full List of MOPEX Scri
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A.1.3 Under Construction Running MO
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Instrument PRF Samp c Norm Radius (
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