Myeloid Leukemia

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Quantitative PCR for Monitoring CML Patients 91 11. Olavarria, E., Kanfer, E., Szydlo, R., et al. (2001) Early detection of BCR-ABL transcripts by quantitative reverse transcriptase-polymerase chain reaction predicts outcome after allogeneic stem cell transplantation for chronic myeloid leukemia. Blood 97, 1560–1565. 12. Radich, J. P., Gooley, T., Bryant, E., et al. (2001) The significance of bcr-abl molecular detection in chronic myeloid leukemia patients “late,” 18 months or more after transplantation. Blood 98, 1701–1707. 13. Merx, K., Muller, M. C., Kreil, S., et al. (2002) Early reduction of BCR-ABL mRNA transcript levels predicts cytogenetic response in chronic phase CML patients treated with imatinib after failure of interferon alpha. Leukemia 16, 1579– 1583. 14. Hughes, T. and Branford, S. (2003) Molecular monitoring of chronic myeloid leukemia. Semin. Hematol. 40, 62–68. 15. Wang, L., Pearson, K., Ferguson, J. E., and Clark, R. E. (2003) The early molecular response to imatinib predicts cytogenetic and clinical outcome in chronic myeloid leukaemia. Br. J. Haematol. 120, 990–999. 16. Muller, M. C., Gattermann, N., Lahaye, T., et al. (2003) Dynamics of BCR-ABL mRNA expression in first-line therapy of chronic myelogenous leukemia patients with imatinib or interferon alpha/ara-C. Leukemia 17, 2392–2400. 17. Hughes, T. P., Kaeda, J., Branford, S., et al. (2003) Frequency of major molecular responses to imatinib or interferon alfa plus cytarabine in newly diagnosed chronic myeloid leukemia. N. Engl. J. Med. 349, 1423–1432. 18. Paschka, P., Muller, M. C., Merx, K., et al. (2003) Molecular monitoring of response to imatinib (Glivec) in CML patients pretreated with interferon alpha. Low levels of residual disease are associated with continuous remission. Leukemia 17, 1687–1694. 19. Branford, S., Rudzki, Z., Harper, A., et al. (2003) Imatinib produces significantly superior molecular responses compared to interferon alfa plus cytarabine in patients with newly diagnosed chronic myeloid leukemia in chronic phase. Leukemia 17, 2401–2409. 20. Melo, J. V. (1997) BCR-ABL gene variants. Baillieres Clin. Haematol. 10, 203–222. 21. Saglio, G., Guerrasio, A., Rosso, C., et al. (1990) New type of Bcr/Abl junction in Philadelphia chromosome-positive chronic myelogenous leukemia. Blood 76, 1819–1824. 22. Pane, F., Frigeri, F., Sindona, M., et al. (1996) Neutrophilic-chronic myeloid leukemia: a distinct disease with a specific molecular marker (BCR/ABL with C3/ A2 junction). Blood 88, 2410–2414. 23. Branford, S., Rudzki, Z., and Hughes, T. P. (2000) A novel BCR-ABL transcript (e8a2) with the insertion of an inverted sequence of ABL intron 1b in a patient with Philadelphia-positive chronic myeloid leukaemia. Br. J. Haematol. 109, 635–637. 24. Okamoto, K., Karasawa, M., Sakai, H., Ogura, H., Morita, K., and Naruse, T. (1997) A novel acute lymphoid leukaemia type BCR/ABL transcript in chronic myelogenous leukaemia. Br. J. Haematol. 96, 611–613.
92 Branford and Hughes 25. Rubinstein, R. and Purves, L. R. (1998) A novel BCR-ABL rearrangement in a Philadelphia chromosome-positive chronic myelogenous leukaemia variant with thrombocythaemia. Leukemia 12, 230–232. 26. How, G. F., Lim, L. C., Kulkarni, S., Tan, L. T., Tan, P., and Cross, N. C. (1999) Two patients with novel BCR/ABL fusion transcripts (e8/a2 and e13/a2) resulting from translocation breakpoints within BCR exons. Br. J. Haematol. 105, 434– 436. 27. Cross, N. C., Feng, L., Chase, A., Bungey, J., Hughes, T. P., and Goldman, J. M. (1993) Competitive polymerase chain reaction to estimate the number of BCR- ABL transcripts in chronic myeloid leukemia patients after bone marrow transplantation. Blood 82, 1929–1936. 28. Westgard, J. O., Barry, P. L., Hunt, M. R., and Groth, T. (1981) A multi-rule Shewhart chart for quality control in clinical chemistry. Clin. Chem. 27, 493–501. 29. Cross, N. C., Hughes, T. P., Feng, L., et al. (1993) Minimal residual disease after allogeneic bone marrow transplantation for chronic myeloid leukaemia in first chronic phase: correlations with acute graft-versus-host disease and relapse. Br. J. Haematol. 84, 67–74.
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M E T H O D S I N M O L E C U L A R
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M E T H O D S I N M O L E C U L A R
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© 2006 Humana Press Inc. 999 River
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vi Preface comprehensive review of
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viii Contents 11 Detection of the F
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x Contributors D. GARY GILLILAND
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RNA and DNA From Leukocytes 1 1 Iso
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RNA and DNA From Leukocytes 3 mine
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RNA and DNA From Leukocytes 5 late
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RNA and DNA From Leukocytes 7 9. Us
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RNA and DNA From Leukocytes 9 16. C
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RNA and DNA From Leukocytes 11 3. I
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Cytogenetic and FISH Techniques 13
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Real-Time RT-PCR Strategies 27 3 Ov
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Real-Time RT-PCR Strategies 29
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Real-Time RT-PCR Strategies 31 cifi
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Real-Time RT-PCR Strategies 33 2.1.
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Real-Time RT-PCR Strategies 35 Fig.
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Real-Time RT-PCR Strategies 37 2.1.
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Real-Time RT-PCR Strategies 39 the
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Page 82 and 83: Quantitative PCR for Monitoring CML
Page 106 and 107: Detection of BCR-ABL Mutations 93 5
Page 108 and 109: Detection of BCR-ABL Mutations 95 F
Page 110 and 111: Detection of BCR-ABL Mutations 97 2
Page 112 and 113: Detection of BCR-ABL Mutations 99 o
Page 114 and 115: Detection of BCR-ABL Mutations 101
Page 120 and 121: Deletion of Derivative Chromosome 9
Page 128 and 129: Diagnosis of PML-RARA-Positive APL
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Duplexed QZyme RT-PCR for APL Analy
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Diagnosis of AML1-MTG8 (ETO)-Positi
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Diagnosis of CBFB-MYH11-Positive AM
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165 Table 1 Primers for CBFB-MYH11
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FIP1L1-PDGFRA in Hypereosinophilic
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FLT3 Mutations in AML 189 12 FLT3 M
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FLT3 Mutations in AML 191 3.1.1. DN
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FLT3 Mutations in AML 193 Table 2 R
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FLT3 Mutations in AML 195 Fig. 2. D
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FLT3 Mutations in AML 197 10. Kiyoi
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WT1 Expression in AML and MDS 199 1
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WT1 Expression in AML and MDS 201 T
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WT1 Expression in AML and MDS 205 T
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WT1 Expression in AML and MDS 207 F
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Classification of AML by DNA-Oligon
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233 Classification of AML by DNA-Ol
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Classification of AML by Monoclonal
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247 Classification of AML by Monocl
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Detecting JAK2 V617F Mutation in MP
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PRV-1 Overexpression in PV and ET 2
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Chimerism Analysis 275 18 Chimerism
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Chimerism Analysis 277 1.2. Detecti
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Chimerism Analysis 279 3. Extractio
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Chimerism Analysis 281 14. 310 Gene
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Chimerism Analysis 283 12. Upon com
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Chimerism Analysis 285 Fig. 2. Calc
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Chimerism Analysis 287 4. Allow the
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Chimerism Analysis 289 capillary el
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Chimerism Analysis 291 and recipien
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Chimerism Analysis 293 Table 2 Comm
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Chimerism Analysis 295 12. Maas, F.
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298 Index management, 128 AML, see
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300 Index and AML, 213, 236, 238, 2
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302 Index chimerism analysis in sex
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304 Index minimal residual disease
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306 Index Stem cell transplantation
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