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112 Campbell<br />
4. Notes<br />
1. The diagnostic marrow or blood sample for all new CML cases should have two<br />
cultures established for conventional cytogenetic analysis; at the Victorian Cancer<br />
Cytogenetics Service (VCCS), two synchronized cultures are set up, one inoculated<br />
with less sample than the other. A marrow or blood sample from a patient<br />
with untreated CML may grow so aggressively in culture that as little as one drop<br />
of marrow added to a 10-mL culture is sufficient to produce several milliliters of<br />
suspension. CML cells are relatively robust, and a successful cytogenetic result<br />
may be obtained from a specimen taken 2 to 3 d before cultures are initiated.<br />
2. The quantities of probe and hybridization buffer described are recommended for<br />
Vysis ® probes. When using probes from other suppliers, check the product insert<br />
for exact quantities.<br />
3. There are a number of probes available that produce signals to identify the presence of<br />
both the BCR/ABL fusion on der(22) and the ABL/BCR fusion on der(9). The use of a<br />
dual fusion probe is preferred, because it will identify the cases with loss of only chromosome<br />
9 or chromosome 22 sequences on the der(9). Most cases show loss of both 9<br />
and 22 sequences, indicating that an extensive deletion has occurred (see Fig. 1).<br />
4. Ideally, metaphase spreads should be identified and the location of the fusion<br />
signals confirmed on the der(22) and der(9). In patients with a deletion of the<br />
der(9), only the der(22) BCR/ABL fusion signal will be observed, together with<br />
signals identifying the normal copies of ABL and BCR on chromosomes 9 and 22,<br />
respectively. However, if metaphases cannot be located, the pattern of two fusion<br />
signals/one red (ABL) signal/one green (BCR) signal indicates the presence of the<br />
t(9;22) without a deletion of the der(9); the pattern of one fusion signal/one red<br />
(ABL) signal/one green (BCR) signal indicates the presence of the t(9;22) with a<br />
deletion of the der(9). The latter pattern of signals in interphase may also reflect<br />
a false-positive cell with incidental co-localization of one red and one green signal<br />
to simulate a fusion signal. Thus, this pattern is useful only in confirming the<br />
presence of the t(9;22) when it is seen in 10% or more of interphase cells (2).<br />
5. The standard karyotype for an individual with chronic myeloid leukemia as<br />
assessed by conventional cytogenetics is 46,XX or XY,t(9;22)(q34;q11·2). When<br />
metaphase FISH with a dual fusion probe is added, the karyotype becomes<br />
46,XX,t(9;22)(q34;q11·2).ish t(9;22)(ABL+,BCR+;BCR+,ABL+), indicating that<br />
there are positive fluorescent signals for both ABL and BCR on the der(9) and the<br />
der(22). When a deletion has been identified, the karyotype becomes<br />
46,XX,t(9;22)(q34;q11).ish t(9;22)(ABL–,BCR–;BCR+,ABL+), showing that the<br />
expected ABL and BCR signals on the der(9) are missing. There is considerable<br />
controversy surrounding the interpretation of the FISH nomenclature guidelines<br />
(13). However, any changes must await the next edition of the International<br />
System for Human Cytogenetic Nomenclature (ISCN).<br />
6. If a deletion has been identified, studies performed after therapy to assess<br />
response to therapy cannot be reliably interpreted using any of the dual-color<br />
dual-fusion or extra signal probes, unless an additional probe is added to the<br />
probe mixture (see Fig. 2).