Dr Stephen McCleanLecturer in ProteomicsContact details:T: +44 (0)28 70324406s.mcclean@ulster.ac.ukBrief pr<strong>of</strong>ile:Dr Stephen McClean obtained undergraduate, Masters and PhD degrees from the <strong>University</strong> <strong>of</strong> <strong>Ulster</strong> and held a<strong>research</strong> position there before becoming a Lecturer in Proteomics in December 2001.Main <strong>research</strong> interests:As an analytical chemist he has broad interest in the application <strong>of</strong> chromatography and mass spectrometrictechnologies to the analysis <strong>of</strong> a range <strong>of</strong> molecules in biological matrices.Of particular interest is the application <strong>of</strong> ion trap, MALDI-TOF and QToF MS/MS to the isolation and characterization<strong>of</strong> novel peptides from amphibian skin secretions, in particular those from the tiger leg monkey frog Phyllomedusahypochondrialis azurea. The characterization and bioactivity testing <strong>of</strong> molecules from other amphibian skin secretions,reptile and arachnid venoms also fall within the remit <strong>of</strong> this <strong>research</strong>. QTOF MS/MS de novo peptide sequencing hasbeen successfully applied to the determination <strong>of</strong> novel peptide structures in these matrices.A T_ PHY P_ NEW _ 1 8 0 _ 7 2 _ 1 0 0 8 0 8 _ 1 5 8 9 Ma x En t 3 9 3 [Ev - 3 7 2 5 4 ,It5 0 ,En 1 ] ( 0 .0 5 0 ,2 0 0 .0 0 ,0 .2 0 0 ,1 4 0 0 .0 0 ,2 ,C mp ) 1 : TO F MS MS 7 9 5 .5 0 ES +1 0 0L G P A L I TR K P L K G K P b Ma xPK G K L PK R T I L A P G L y Ma x1 4 7 3 .9 9b 1 41 5 8 9 .0 6 ( M +H ) +%01 2 8 8 .9 1b 1 27 3 7 .5 73 1 4 .2 3 4 2 4 .3 01 4 7 5 .0 91 0 4 7 .7 96 5 2 .4 9 7 9 5 .1 2 9 0 9 .6 21 8 6 .1 3a 51 1 7 5 .8 11 3 6 0 .8 51 0 2 2 .7 1 b 1 01 5 8 9 .9 11 5 8 .9 46 4 4 .9 1M/z1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0 8 0 0 9 0 0 1 0 0 0 1 1 0 0 1 2 0 0 1 3 0 0 1 4 0 0 1 5 0 0 1 6 0 0He has also studied the pr<strong>of</strong>iling <strong>of</strong> anti-depressent and anti-psychotic agents in human hair samples using ion trapmultiple stage mass spectrometry compared with QToF MS/MS to elucidate fragmentation pathways for selecteddrugs and metabolites.Esteem indicators:Stephen has over 40 peer-reviewed publications and has secured income for his <strong>research</strong> as well as undertakinganalytical consultancy work with external companies. To date he has supervised eight PhD projects to completionand is currently supervising <strong>research</strong> projects at undergraduate and postgraduate level. He is a member <strong>of</strong> theOrganising Committee <strong>of</strong> the Irish Mass Spectrometry Society, the British Mass Spectrometry Society and the RoyalSociety <strong>of</strong> Chemistry. He is also a Member <strong>of</strong> the Editorial Board <strong>of</strong> the Open Spectroscopy Journal and acts asreviewer for the following journals: Analytica Chimica Acta, Electrophoresis, Journal <strong>of</strong> Comparative Biochemistryand Physiology, Proteomics and Rapid Communications in Mass Spectrometry.During the year Stephen was invited to deliver a presentation entitled: “QTOF MS/MS de novo sequencing <strong>of</strong> naturallyoccurring peptides” at the Irish Mass Spectrometry Society Proteomics Meeting, Food <strong>Research</strong> Centre, Ashtown,66
Dublin (in November 2007) and he was also Chair <strong>of</strong> the afternoon session <strong>of</strong> Irish Mass Spectrometry SocietyConference, in Dublin (May 2008).Publication:Thompson AH, Bjourson AJ, Orr DF, Shaw C and McClean S; Amphibian skin secretomics: application <strong>of</strong> parallelquadrupole time-<strong>of</strong>-flight mass spectrometry and peptide precursor cDNA cloning to rapidly characterize the skinsecretory peptidome <strong>of</strong> Phyllomedusa hypochondrialis azurea: discovery <strong>of</strong> a novel peptide family, the hyposins;Journal <strong>of</strong> Proteome <strong>Research</strong>, 6: 3604 –3613, 2007Dr Poonam Singh (nee Nigam)Senior Lecturer in BiotechnologyContact details:T: +44 (0)28 70324053p.singh@ulster.ac.ukIndicators <strong>of</strong> esteemDr Singh (nee Nigam) is currently an Associate Advisor in the Biotechnology British Council. She is also acted asan External Examiner PhD student viva at Manchester <strong>University</strong> (Ms Castelo sponsored by European CommissionMarie Curie Fellowship for early stage <strong>Research</strong> Training Program).Dr Singh was invited to give the following lectures at international conferences:“Bioremediation <strong>of</strong> Textile waste water through solid state fermentation systems”, at the International Conference on NewHorizons in Biotechnology Trivandrum, India (26-29 November 2007 – IL, 26: 047, 2007).“Studies on Encapsulated and entrapped yeast for Bioethanol production”, Biospectrum, International Symposium onAdvances in Food Biotechnology & Nutrition, (30 Nov-1 Dec 2007), Mar Athanasios College for Advanced Studies,Tiruvalla, Kerala, India (pp. 25-26: LL-06, 2007).Publications:Genest S, Kerr C, Shah A, Rahman MM, Naser GMM, Nigam P, Nahar L, Sarker SD; Comparative Bioactivity Studies onTwo Mimosa Species; The Latin American And Caribbean Bulletin <strong>of</strong> Medicinal And Aromatic Plants (BLACPMA Derechos dePublicación © 2008 Boletín Latinoamericano y del Caribe de Plantas Medicinales y Aromáticas, 7: 38–43, 2008Robinson T & Nigam P; Remediation <strong>of</strong> textile dye-waste water using a white rot fungus Bjerkandera adusta throughsolid-state fermentation (SSF); Applied Biochemistry and Biotechnology, 151: 618-628, 2008Dr Nigel TernanLecturer in Microbial ProteomicsContact details:T: +44 (0)28 70323063ng.ternan@ulster.ac.ukDr Nigel Ternan gained his Ph.D. from Queen’s <strong>University</strong> Belfast (1997) and was apointed to a lectureship inMicrobiology at the <strong>University</strong> <strong>of</strong> <strong>Ulster</strong> in 2003, having previously held the position <strong>of</strong> <strong>Research</strong> Fellow at UU.He has previously investigated the catalytic activities <strong>of</strong> novel microbial enzymes from the point <strong>of</strong> view <strong>of</strong> both67
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BIOMEDICAL SCIENCESRESEARCH INSTITU
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1 Foreword by the Pro Vice-Chancell
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2 Foreword by the Research Institut
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The BMSRI Research StructureThe BMS
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BMSRI Core FacilitiesContact: Karen
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of Metabolomics, pharmacy, nutritio
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BMSRI Academic Heads new Regional N
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4. BIOMEDICAL GENOMICS RESEARCH GRO
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Dr Raymond BeirneLecturer in Optome
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Dr Julie McClellandLecturer in Opto
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Graham JE, Moore JE, Moore JE, McCl
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Research Staff:Dr David OrrSenior R
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Dr Victoria McGilliganResearch Asso
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Grant Holder Anderson, Prof RSFundi
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Funding Body Royal Irish AcademyAmo
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14. BIOMEDICAL SCIENCES RESEARCH IN
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Student: Simon GenglerTitle: Effect
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Student: Anisha MazumdarTitle: Anal
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Student: Clare RyanTitle: How does
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CONGRATULATIONS TO THE FOLLOWING PO