Geographic Information Systems (ACM HPDGIS 2010), November 2, 2010, San Jose, CA, USA 3. Padmanabhan, A., and Wang, S. "A Distributed Resource Broker for Spatial Middleware Using Adaptive Space-Filling Curve". In: Proceedings of the ACM SIGSPATIAL International Workshop on High Performance and Distributed Geographic Information Systems (ACM HPDGIS 2010), November 2, 2010, San Jose, CA, USA 4. D. S. Katz, S. Callaghan, R. Harkness, S. Jha, K. Kurowski, S. Manos, S. Pamidighantam, M. Pierce, B. Plale, C. Song, J. Towns, "Science on the TeraGrid," Computational Methods in Science and Technology (CMST), v.Special Issue 2010, pp. 81-97, 2010. 5. Cobb, J. W. “SNS and TeraGrid's NSTG: A best practice for integration of national cyberinfrastructure with an experimental user facility” NOBUGS 2010 Oct. 10-13, 2010 Gatlinburg, TN < http://neutrons.ornl.gov/conf/nobugs2010/> 6. Javier V. Goicochea, Marcela Madrid, and Cristina Amon, “Hierarchical Modeling of Heat Transfer in Silicon-Based Electronic Devices”, ASME Journal of Heat Transfer 132, 102401 (2010). 7. Kh. Odbadrakh, A. Rusanu, G. M. Stocks, and G. D. Samolyuk, M. Eisenbach, Yang Wang, D.M. Nicholson, “Calculated Electronic and Magnetic Structure of Screw Dislocations in Alpha Iron”, Journal of Applied Physics (accepted for publication). 8. Alexander J. Ropelewski, Hugh B. Nicholas, Jr. and Ricardo R. Gonzalez Mendez, “MPI-PHYLIP: Parallelizing Computationally Intensive Phylogenetic Analysis Routines for the Analysis of Large Protein Families”, PLoS One- 9. Yang Wang, D.M.C. Nicholson, G.M. Stocks, Aurelian Rusanu, Markus Eisenbach, and R. E. Stoller, “A study of radiation damage effects on the magnetic structure of bulk Iron”, Journal of Applied Physics, (accepted for publication). 10. H. Zhang, J. Woo, L. Zhao, D. Braun, X.C. Song, M. Lakshminarayanan. "Domain-specific web services for scientific application developers," Proceedings of the 6th Gateway Computing Environments Workshop (GCE10) at SC10, New Orleans, LA, November 2010. 11. Understanding the Impact of Emerging Non-Volatile Memories on High-Performance, IO-Intensive Computing, Adrian M. Caulfield, Joel Coburn, Todor Mollov, Arup De, Ameen Akel, Jiahua He, Arun Jagatheesan, Rajesh K. Gupta, Allan Snavely, and Steven Swanson, Supercomputing, 2010. (Nominated for best technical paper and best student paper). 12. "Creating the CIPRES Science Gateway for Inference of Large Phylogenetic Trees" by M.A. Miller, W. Pfeiffer, and T. Schwartz was presented at the GCE10 workshop in conjunction with SC10. 13. E. McQuinn, A. Chourasia, J. H. Minster, J. Schulze (2010), GlyphSea: Interactive Exploration of Seismic Wave Fields Using Shaded Glyphs, Abstract IN23A-1351 presented at 2010 Fall Meeting, AGU, San Francisco, Calif., 13-17 Dec. 14. Yifeng Cui, Kim B. Olsen, Thomas H. Jordan, Kwangyoon Lee, Jun Zhou, Patrick Small, Daniel Roten, Geoffrey Ely, Dhabaleswar K. Panda, Amit Chourasia, John Levesque, Steven M. Day, and Philip Maechling. 2010. Scalable Earthquake Simulation on Petascale Supercomputers. In Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis (SC '10). IEEE Computer Society, Washington, DC, USA, 1-20. 15. Burtscher M., Kim B., 2010 “Proceedings of the ACM/IEEE Supercomputing Conference 2010” PerfExpert: An Easy-to-Use Performance Diagnosis Tool for HPC Applications 16. Navratil P. 2010 “IBERGRID 2010” Introduction to Longhorn and GPU-Based Computing 17. Navratil P., 2010 “Proceedings of the Sixth High-End Visualization Workshop Increasing Hardware Utilization for Peta-Scale Visualization 18. Jeong B., Abram G., Johnson G., Navratil P. 2010 “NVIDIA GPU Technology Conference” Large-Scale Visualization Using a GPU Cluster 19. Hanlon M., Mock S., Nuthulapati P., Gonzales M., Soltis P., Soltis D., Majure L., Payton A., Mishler B., Tremblay T., Madsen T., Olmstead R., McCourt R., Wojciechowski M., Merchant N. 2010 “IEEE Proceedings of Gateway Computing Environments 2010” My-Plant.<strong>org</strong>: A Phylogenetically Structured Social Network
A.2. Publications from TeraGrid Users A.2.1 Publications from TeraGrid Users (for 2010 Q3) The following 675 publications were gathered primarily from renewal Research submissions to the September 2010 TRAC meeting. The extraction process was conducted by a UCSD undergraduate student at SDSC. The publications are <strong>org</strong>anized by field of science and by the proposal with which they were associated. Advanced Scientific Computing MCA06N043 1. A. Uzun and M. Y. Hussaini, “Simulation of Noise Generation in Near-Nozzle Region of a Chevron Nozzle Jet,” AIAA Journal, Vol. 47, No. 8, August 2009, pp. 1793 – 1810. 2. H. Zhao, A. Uzun, M. Y. Hussaini and S. L. Woodruff, “Computations of Flow Past a Circular Cylinder Using a Continuous-Turbulence Model,” AIAA Journal, Vol. 47, No. 10, October 2009, pp. 2460 – 2466. 3. A. Uzun, and M. Y. Hussaini, “Simulations of Vortex Formation Around a Blunt Wing Tip,”AIAA Journal, Vol. 48, No. 6, June 2010, pp. 1221 – 1234. 4. J. Bin, A. Uzun and M. Y. Hussaini, “Adaptive Mesh Refinement for Chevron Nozzle Jet Flows,” Computers and Fluids Journal, Vol. 39, No. 6, June 2010, pp. 979 – 993. 5. A. Uzun and M. Y. Hussaini, “High-Fidelity Numerical Simulation of a Chevron Nozzle Jet Flow,” Under review for publication in International Journal of Aeroacoustics, 2010. 6. J. Bin, A. Uzun and M. Y. Hussaini, “Adaptive Grid Redistribution Method for a Domain with Complex Boundaries,” Under review for publication in Journal of Computational Physics, 2010. 7. A. Uzun and M. Y. Hussaini, “High-Fidelity Numerical Simulations of a Round Nozzle Jet Flow,” In preparation, 2010. 8. A. Uzun and M. Y. Hussaini, “Prediction of Tandem Cylinder Noise using Delayed Detached Eddy Simulation,” In preparation, 2010. Astronomical Sciences AST020001 9. “Selection Rules for the Nonlinear Interaction of Internal Gravity Waves,” Jiang, C.-H. and Marcus, P. S., March 2009, Phys. Rev. Letters, 102, 124502-1 to 124502-4. 10. “Jupiter’s Shrinking Great Red Spot and Steady Oval BA: Velocity Measurements with the ACCIV Automated Cloud Tracking Method,” Asay-Davis, X., Marcus, P., Wong, M. and e Pater, I., May 2009, Icarus, 203, 164–188. 11. “Changes in Jupiter’s Zonal Velocity Profile between 1979 and 2008,” Asay-Davis, X., Wong, M., Marcus, P., and de Pater, I., under review (minor revision required), Icarus, 2010. 12. “Jupiter’s Zonal Winds: Are They Bands of Homogenized Potential Vorticity and Do They Form a Monotonic Staircase” Marcus, P. and Shetty S., submitted to Philsophical Transactions Royal Society A, 2010. 13. “KECK AO and HST Images of Vortices on Jupiter,” de Pater, I., Wong, M., Luszcz-Cook, S, Adamkovics, M., Conrad, A., Marcus, P., Asay-Davis, X., and Go, C., under review (minor revision required), Icarus, 2010. 14. “Three-Dimensional Simulations of Kelvin-Helmholtz Instability in Settled Dust Layers in Protoplanetary Disks,” Barranco, J.A., February 2009, The Astrophysical Journal, 691, 907–921. 8. “Forming Planetesimals by Gravitational Instability: I. The Role of the Richardson Number in Triggering the Kelvin- Helmholtz Instability,” Lee, A., Chiang, E., Asay-Davis, X., Barranco, J., August 2010, The Astrophysical Journal, 718.
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