5 th <strong>European</strong> <strong>Congress</strong> <strong>of</strong> <strong>Virology</strong>Friday 13 th September 2013, 15H00 – 17h15WORKSHOP 7: “CELLULAR FACTORS CONTROLINGVIRAL INFECTION AND ROLE OF HOST GENETICS”Chairpersons: Frank KIRCHHOFF (Ulm, GERMANY)& Aine McKNIGHT (London, UNITED KINGDOM)Room Prestige Gratte-CielKEYNOTE:Host cell factors and pathways promoting and restricting hepatitis Cvirus replicationRalf BARTENSCHLAGERDepartment <strong>of</strong> Infectious Diseases, Molecular <strong>Virology</strong>, University <strong>of</strong> Heidelberg,Im Neuenheimer Feld 345, Heidelberg, GERMANYHepatitis C viruses (HCV) comprise a group <strong>of</strong> positive-strand RNAviruses belonging to the Flaviviridae family. As a major cause <strong>of</strong> acuteand chronic liver disease worldwide, HCV has received much attention.With the advent <strong>of</strong> highly efficient and robust cell culture systems forHCV, the principles <strong>of</strong> the viral replication cycle have been unravelled. Asurprisingly high number <strong>of</strong> molecules that are essential for or that promoteHCV entry into hepatocytes has been identified. Moreover, importantinsights into the biogenesis and architecture <strong>of</strong> the membranous replicationcompartment induced upon viral infection have been gained. Severalhost cell factors required for formation or activity <strong>of</strong> the viral replicationmachinery, such as cyclophilin A and phosphatidyl inositol-4-kinase IIIalpha,have been identified and they represent attractive targets for hostfactor-targeting antiviral therapy. Finally, it was found that HCV assemblyoccurs in close association with cytosolic and luminal lipid dropletsexplaining, at least in part, why HCV particles are tightly associated withhost cell lipoproteins and lipids.A hallmark <strong>of</strong> HCV infection is the high rate <strong>of</strong> persistence (∼80%)arguing that this virus has developed efficient strategies to overcome innateand adaptive immune responses. It is well established that the NS3 serinetypeprotease blocks the induction <strong>of</strong> antiviral cytokines by proteolyticcleavage <strong>of</strong> adaptor proteins involved in RIG-I and TLR-3 dependentsignalling. Paradoxically however, in infected patients interferon-inducedgenes are activated and the degree <strong>of</strong> activation negatively correlates withoutcome <strong>of</strong> interferon-based therapy. While the underlying mechanismsremain to be determined, it is obvious that HCV has developed strategiesto sustain persistence in spite <strong>of</strong> an antiviral program.ORAL COMMUNICATIONSREF O101Hepatitis C virus infection modulates the central carbon metabolism<strong>of</strong> the cellOlivier DIAZ 1,2 , Christophe RAMIÈRE 1,2,3 , Jonathan RODRIGUEZ 1,2 ,Aurélie BADILLO 4 , Jean Charles PORTAIS 5 , Vincent LOTTEAU 1,2 ,Patrice ANDRÉ 1,2,31 Université de Lyon, Lyon, FRANCE; 2 INSERM U1111 – CNRSUMR5308 Université Lyon 1, ENS de Lyon, Lyon, FRANCE; 3 HospicesCivils de Lyon, Lyon, FRANCE; 4 UMR 5086 CNRS Université Lyon 1,Lyon, FRANCE; 5 UMR5504, UMR792 Ingénierie des Systèmes Biologiqueset des Procédés CNRS, INRA, INSA, Toulouse, FRANCEPerturbations <strong>of</strong> glucido lipidic metabolism, induced by Hepatitis C virus(HCV) infection in the hepatocyte, are not completely elucidated. Recentlyseveral viruses were described as capable to subvert central carbon metabolism(CCM) to support their replication and assembly. We thus investigatedhow HCV modulates CCM. We monitored uptake and release <strong>of</strong> key metabolitesin supernatants <strong>of</strong> HCV infected Huh7.5 cells during 72 h postinfection. Glucose and glutamine uptake and lactate excretion were increasedindicating glycolysis modulations in infected cells. We identified theprotein protein interaction <strong>of</strong> NS5A with hexokinase (HK), the first andrate limiting enzyme <strong>of</strong> glycolysis. Enzymatic HK assay performed withcytosolic fraction <strong>of</strong> cells replicating the HCV subgenomic replicon (Huh913) revealed an activity increase. The same observation was performed incells overexpressing only NS5A. Moreover, addition <strong>of</strong> purified NS5A inin vitro HK assay was sufficient to increase HK activity. To further definefunctionally how HCV modulate CCM, 42 different metabolic moleculesreferred as intermediates or connected to glycolysis and citrate cycle metabolismwere analyzed in HCV infected Huh7.5 cells using HPAEC andIDMS. Data revealed that beside the apparent global increased glycolysisin infected cells, nucleotide precursor’s synthesis appeared enhancedwhereas no changes were observed within cell energy status. All togetherthese observations indicate a direct interaction between non structuralHCV proteins and glycolysis enzymes at the origin <strong>of</strong> CCM modulation byHCV.REF O102Coxsackievirus Hijacks Host miRNA 126 to Mediate Cross talk<strong>of</strong> ERK and Wnt/beta catenin Signal Pathways for Its ReplicationDecheng YANG, Xin YE, Maged HEMIDA, Ye QIU, Paul HANSON,Huifang Mary ZHANGUniversity <strong>of</strong> British Columbia, Vancouver, CANADACoxsackievirus B3 (CVB3), a positive single stranded RNA virus, is amember <strong>of</strong> the Enterovirus genus in the Picornaviridae family. It is the primarypathogen <strong>of</strong> viral myocarditis. CVB3 infection causes directed injury<strong>of</strong> the heart by rapid replication in the myocardium. However, the molecularpathways leading to myocarditis remain unclear. microRNA (miRNA),as a novel regulator <strong>of</strong> gene expression, may play an essential role in CVB3pathogenesis. To study the functional role <strong>of</strong> miRNAs in modulating CVB3replication, we selected a heart abundant miRNA, miR 126, to test ourhypothesis. Here we describe a novel mechanism by which miR 126 regulatestwo signal pathways essential for CVB3 replication. We found thatCVB3 induced ERK1/2 activation triggered the phosphorylation <strong>of</strong> ETS1/2 transcription factors, which induced miR 126 upregulation. By usingboth miR 126 mimics and its inhibitors, we proved that the upregulatedmiR 126 suppressed SPRED1(sprout related, EVH1 domain containing 1)expression and in turn enhanced ERK1/2 activation. This positive feedbackloop <strong>of</strong> ERK1/2 miR 126 ERK1/2 promoted CVB3 replication at earlyphase <strong>of</strong> infection. Meanwhile, miR 126 expression stimulated the GSK3b activity and induced degradation <strong>of</strong> beta catenin via suppressing LRP6(low density lipoprotein receptor related protein 6) and WRCH1(Wnt responsiveCdc42 homolog 1), two newly identified targets in the Wnt/catenin pathway, which sensitized the cells to virus induced cell deathand increased viral progeny release to initiate new infections. Our resultsdemonstrate for the first time that dynamically upregulated miR 126 uponCVB3 infection targets SPRED1, LRP6 and WRCH1 genes, mediatingcross talk between ERK1/2 and Wnt/beta catenin signal pathways, andthus promotes viral replication and contributes to the viral cytopathogenicity.Vi<strong>rologie</strong>, Vol 17, supplément 2, septembre 2013S83
5 th <strong>European</strong> <strong>Congress</strong> <strong>of</strong> <strong>Virology</strong>REF O103Human respiratory syncytial virus infection is modulated by StreptococcuspneumoniaeDuy Tien NGUYEN 1 , Rogier LOUWEN 2 , Geert VAN AMERONGEN 1 ,Ken LEMON 3 , Ad LUIJENDIJK 2 , Karin ELBERSE 4 , AlbertD.M.E. OSTERHAUS 1 , W. Paul DUPREX 5 , Rik L. DE SWART 11 Department <strong>of</strong> Viroscience, Erasmus MC, Rotterdam, THE NETHER-LANDS; 2 Department <strong>of</strong> Medical Microbiology and Infectious Diseases,Erasmus MC, Rotterdam, THE NETHERLANDS; 3 Department <strong>of</strong> Microbiology,Queen’s University <strong>of</strong> Belfast, Belfast, UNITED KINGDOM;4 National Institute <strong>of</strong> Public Health and the Environment, Bilthoven, THENETHERLANDS; 5 Department <strong>of</strong> Microbiology, Boston University, Boston,USAHuman respiratory syncytial virus (HRSV) and Streptococcus pneumoniaeare important causative agents <strong>of</strong> respiratory infections around the world.The burden for HRSV is highest in the pediatric population. Almost allinfants are infected by HRSV before the age <strong>of</strong> two years, but only asmall proportion develops severe disease. Bacterial pathogens such as S.pneumoniae can <strong>of</strong>ten be cultured from children hospitalized with HRSV.Interactions between viral and bacterial pathogens have been describedboth in vitro and in vivo, but causal relationships are poorly understood.S. pneumoniae has the ability to colonize humans without manifestation<strong>of</strong> disease. We have investigated whether S. pneumoniae colonizationmodulates HRSV infection, using a new recombinant (r) HRSV fromsubgroup B that expresses enhanced green fluorescent protein (EGFP),rHRSVB05EGFP. Ten S. pneumoniae serotypes obtained from colonizedchildren were obtained from a large cohort study. We have used humanB lymphocytes, primary well differentiated normal human bronchial epithelial(wd NHBE) cells with tight junctions and cilia for our in vitrostudies. Five <strong>of</strong> the ten S. pneumoniae serotypes enhanced HRSV infectionin B cells, and four <strong>of</strong> these also enhanced HRSV infections <strong>of</strong> wdNHBE cells. In ex vivo lung slice cultures obtained from uninfected cottonrats six S. pneumoniae serotypes enhanced HRSV infection. In conclusionwe show that S. pneumoniae colonization can modify HRSV infection invitro. Studies designed to investigate whether S. pneumoniae modulatesHRSV infection in cotton rats are ongoing.REF O104Gene loss and adaptation to hominoids underlie the ancient origin<strong>of</strong> HIV 1Lucie ETIENNE 1 , Beatrice H. HAHN 4 , Frederick A. MATSEN 3 ,Michael EMERMAN 1,21 Division <strong>of</strong> Human Biology, Fred Hutchinson Cancer Research Center,Seattle, USA; 2 Division <strong>of</strong> Basic Sciences, Fred Hutchinson CancerResearch Center, Seattle, USA; 3 Division <strong>of</strong> Public Health Sciences,Fred Hutchinson Cancer Research Center, Seattle, USA; 4 Department <strong>of</strong>Microbiology, Perelman School <strong>of</strong> Medicine, University <strong>of</strong> Pennsylvania,Philadelphia, USAHIV 1 resulted from the cross species transmission <strong>of</strong> SIVcpz, a simianimmunodeficiency virus that naturally infects chimpanzees. SIVcpz, inturn, arose from the species jump and recombination <strong>of</strong> two SIV lineagesfrom old world monkeys. Lentiviral cross species transmissions are partlydriven by the capacity <strong>of</strong> viral accessory genes to adapt to antagonize hostantiviral factors. Therefore, to understand the ultimate origins <strong>of</strong> HIV 1,we analyzed the mechanisms by which the recombinant SIVcpz adaptedto hominoids.Phylogenetic analyses showed that the birth <strong>of</strong> SIVcpz was accompaniedby the complete loss <strong>of</strong> the accessory gene vpx, which, in other SIVs,is used to antagonize the host protein SAMHD1. Remarkably, the geneloss was associated with the reconstruction <strong>of</strong> the overlapping vif gene by“overprinting” using a cryptic stop codon in an alternate reading frame.The novel Vif notably acquired the conserved PPLP motif that plays a rolein HIV 1 Vif function. Overall, these events and subsequent mutationsresulted in a Vif that was more potent at restricting the hominoid version<strong>of</strong> the antiviral protein APOBEC3G, but also led to the inability <strong>of</strong> SIVcpzto counteract the restriction factor SAMHD1. Lastly, we show that adaptation<strong>of</strong> SIV to chimpanzees facilitated the ability <strong>of</strong> Vif to antagonizehuman APOBEC3G, which was in favor <strong>of</strong> a successful viral emergencein humans.Thus, a complex set <strong>of</strong> adaptive events in response to selective pressurefrom hominoid restriction factors led to the origin <strong>of</strong> SIVcpz, andcontributed to lowering the species barrier to human infection.REF O105A novel mechanism <strong>of</strong> human cytomegalovirus evasion from restrictionfactor IFI16Valentina DELL’OSTE 1 , Deborah GATTI 1 , Francesca GUGLIESI 1 ,Marco DE ANDREA 1,2 , Matteo BIOLATTI 1 , Marta VALLINO 3 ,Manfred MARSCHALL 4 , Marisa GARIGLIO 2 , Santo LANDOLFO 11 Department <strong>of</strong> Public Health and Pediatric Sciences, University <strong>of</strong> Turin,Turin, ITALY; 2 Department <strong>of</strong> Translational Medicine, University <strong>of</strong> PiemonteOrientale “A. Avogadro”, Novara, ITALY; 3 Department <strong>of</strong> LifeSciences and Systems Biology, University <strong>of</strong> Turin, Turin, ITALY; 4 Institutefor Clinical and Molecular <strong>Virology</strong>, University <strong>of</strong> Erlangen Nuremberg,Erlangen, GERMANYIntrinsic immune mechanisms constitute an antiviral frontline defensemediated by constitutively expressed proteins termed “restriction factors”.Human Cytomegalovirus (HCMV) has evolved mechanisms to efficientlyevade the antiviral state. We have demonstrated that the DNA sensorIFI16 restricts HCMV replication by down regulating viral early and latemRNAs as well as their protein expression. Here, we show that duringearly stages <strong>of</strong> infection, HCMV induces IFI16 overexpression in primaryhuman fibroblasts (HELF). Despite this induction, continuous virus replicationindicates that somehow the virus is able to escape IFI16 restrictionactivity. Confocal microscopy revealed that, starting from 24 hours postinfection, IFI16 relocalizes from the nucleus to the virus assembly complex(AC), where it colocalizes with viral structural proteins such as gBand pp65. We demonstrate that the viral kinase pUL97 binds and phosphorylatesIFI16 thus triggering its egression from the nucleus <strong>of</strong> infectedcells. Then, the IFI16 AC complex allows IFI16 carriage in the newlyassembled virions where it is embedded in the matrix superficial layersas demonstrated by electron microscopy analysis. Altogether, these datashows a new mechanism through which HCMV is able to neutralize IFI16restriction activity by inducing first its delocalization and then its trappinginto egressing virions.REF O106Use <strong>of</strong> exome sequencing and RNAi to understand the influence<strong>of</strong> host factors on the outcome <strong>of</strong> influenza infectionRachael WASH 1 , Deepti GURDASANI 1 , Stephanie FRANZ 1 , CarmenDIAZ SORIA 1 , Manj SANDHU 1,3 , Paul KELLAM 1,21 Wellcome Trust Sanger Institute, Cambridge, UNITED KINGDOM;2 University College London, London, UK; 3 University <strong>of</strong> Cambridge,Cambridge, UNITED KINGDOMDuring the influenza A H1N1/09 pandemic hospitalisation rates in Englandwere estimated at 4.7/100,000 population. Although many patients hadone or more pre existing comorbidities, up to 40% <strong>of</strong> patients did not andwere previously healthy. Whole virus genome sequencing <strong>of</strong> H1N1/09showed the extent <strong>of</strong> virus variation. Data suggests that whilst genomevariation occurs, and can subtly alter replication properties <strong>of</strong> the virus,it is not sufficient to account for severe or fatal influenza infection. Alterationsin human genes, such as IFITM3, that interact with the virus arehowever associated with severe influenza pathogenesis. To understand theinfluence <strong>of</strong> host genetics on virus infection we have analysed in detailS84 Vi<strong>rologie</strong>, Vol 17, supplément 2, septembre 2013