07.04.2013 Views

Essentials of Computational Chemistry

Essentials of Computational Chemistry

Essentials of Computational Chemistry

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

406 11 IMPLICIT MODELS FOR CONDENSED PHASES<br />

than intuition that one continuum modeling algorithm is more or less accurate than another<br />

in the computation <strong>of</strong> this quantity (Curutchet et al. 2003a). One may take as a standard<br />

for comparison numerically converged solutions <strong>of</strong> the Poisson equation, but the Poisson<br />

equation is itself a model, and not necessarily the optimal one. In order to make comparisons<br />

against experiment, it is necessary to supplement the polarization (and distortion) energies<br />

with terms corresponding to cavitation, dispersion, structural rearrangement, etc. Models that<br />

purport to compute the full free energy <strong>of</strong> solvation may then be compared one to another<br />

using experimental free energies <strong>of</strong> transfer as a common yardstick.<br />

11.3 Continuum Models for Non-electrostatic Interactions<br />

Just as the electrostatic component <strong>of</strong> the free energy <strong>of</strong> solvation cannot be measured, neither<br />

can the non-electrostatic components. That being said, various experimental systems may<br />

be biased so as to make one component or another likely to heavily dominate the solvation<br />

free energy. For example, the solvation free energies <strong>of</strong> charged species would be expected<br />

to be dominated by the electrostatic component, and solvation free energies for ions can<br />

be helpful in the assignment <strong>of</strong> parametric Born radii to atoms. To assess the free-energy<br />

changes associated with cavitation, dispersion, and other physical effects, different neutral<br />

model systems have been studied, and we examine some <strong>of</strong> these next.<br />

11.3.1 Specific Component Models<br />

Noble gas atoms have no permanent electrical moments, and the lighter ones are amongst the<br />

least polarizable <strong>of</strong> chemical systems. Thus, their transfer into a solvent may be regarded as<br />

a process reasonably cleanly associated with cavitation, i.e., the introduction <strong>of</strong> the noble gas<br />

atom is like introducing a vacuum <strong>of</strong> equivalent size into the solvent. By examining solvation<br />

data for the noble gases and certain other systems, Pierotti (1976) developed a formula for<br />

the cavitation free energy, associated with a spherical cavity volume, that depends on the<br />

radius <strong>of</strong> the sphere to the first, second, and third powers. Simulation data have been used<br />

to supplement noble-gas experimental data and refine constants appearing in the Pierotti<br />

formula (Höfinger and Zerbetto 2003). By viewing a non-spherical solute as a collection <strong>of</strong><br />

atomic spheres where overlapping volumes are only accounted for once, Pierotti’s formula<br />

has been generalized to molecular cavities (Claverie 1978; Colominas et al. 1999).<br />

Dispersion is a considerably more difficult modeling task. As first noted in Section 2.2.4,<br />

dispersion is a purely quantum mechanical effect associated with the interactions between<br />

instantaneous local moments favorably arranged owing to correlation in electronic motions.<br />

In order to compute dispersion at the QM level, it is necessary to include electron correlation<br />

between interacting fragments, which immediately sets a potentially rather high price on<br />

direct computation. More difficult still, however, is that the continuum model by construction<br />

does not include the solvent molecules in the first place.<br />

As a result, some approaches to computing dispersion energy have involved using either<br />

experimental or theoretical data for gas-phase clusters to estimate the strength <strong>of</strong> dispersion<br />

interactions between different possible solute and solvent functional groups. However,

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!