07.04.2013 Views

Essentials of Computational Chemistry

Essentials of Computational Chemistry

Essentials of Computational Chemistry

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

446 12 EXPLICIT MODELS FOR CONDENSED PHASES<br />

A slightly more complex representation is to put equal positive atomic charges on the<br />

hydrogen atoms and a negative charge on the symmetry axis, or equal negative charges<br />

in the lone pair regions, again to mimic water’s dipole moment, but also to better represent<br />

its overall charge distribution. Such very simple models, with careful parameterization,<br />

do remarkably well in reproducing many properties <strong>of</strong> liquid water, e.g., bulk density,<br />

heat <strong>of</strong> vaporization, compressibility, heat capacity, etc. The most successful models along<br />

these lines, that are widely used in modern simulations, are the transferable-intermolecularpotentials-3-<br />

and -4-point-charge water models (TIP3P and TIP4P; Jorgensen et al. 1983).<br />

The similarly designed SPC (simple point charge) water model also continues to see modern<br />

use (Berendsen et al. 1981) including forms recently modified to improve its dielectric and<br />

diffusive properties (Glattli, Daura, and van Gunsteren 2003).<br />

For non-aqueous solvents, the approximation <strong>of</strong> the solvent as a LJ sphere is usually less<br />

practical. However, substantial time savings can be realized by employing a united-atom<br />

approach for carbon atoms and their attached hydrogens. The most complete parameterization<br />

<strong>of</strong> organic solvents has been accomplished as part <strong>of</strong> the OPLS force field, including<br />

inter alia alkanes, aromatics, carbon tetrachloride, chlor<strong>of</strong>orm, furan, n-octanol, and pyrrole,<br />

many in both UA and AA representations (see Table 2.1 and also Jorgensen, Briggs, and<br />

Contreras 1990; Kaminski et al. 1994; McDonald and Jorgensen 1998). In these cases, as for<br />

water, solvent parameters were optimized based on comparison <strong>of</strong> bulk solvent properties to<br />

experimental measurements.<br />

At the next level <strong>of</strong> complexity, the polarity <strong>of</strong> solvent models, as made manifest by<br />

their atomic partial charges, can be augmented with a polarizability. This allows the solvent<br />

molecule to respond to its surroundings in a fashion conceptually similar to the electronic<br />

component <strong>of</strong> the solvent polarization described in Section 11.1.1. Typically a polarizability<br />

tensor α is assigned either to the solvent molecule as a whole or to individual atoms. Then,<br />

the induced dipole moment at each polarizable position can be determined from<br />

µ ind = αE (12.30)<br />

where E is the total electric field arising from all <strong>of</strong> the atomic point charges and all <strong>of</strong><br />

the induced dipoles. Thus, µ ind must be determined iteratively, with convergence potentially<br />

being problematic. Once converged, the additional contribution to the total electrostatic<br />

energy from the charge-induced dipole interactions can be computed according to<br />

V = 1<br />

2<br />

<br />

i<br />

j<br />

qiµ ind<br />

j · rij<br />

r 3 ij<br />

(12.31)<br />

where i runs over charge sites and j runs over polarizability sites and r is the intersite<br />

distance. In addition, induced-dipole–induced-dipole interactions contribute according to<br />

Eq. (2.23).<br />

Owing to its particular importance, polarizable solvent models have largely been restricted<br />

to water, for which a sizable number have been developed (see, for example, Dang 1992;<br />

Rick, Stuart, and Berne 1994; Bernardo et al. 1994; Zhu and Wong 1994; Lefohn, Ovchinnikov,<br />

and Voth 2001). Because evaluating the terms deriving from solvent polarizability

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!