Growth model of the reared sea urchin Paracentrotus ... - SciViews

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ANNEXES................................................................................................ 213 Annex I: R code for fitting growth models ..........................................................215 a. Code for analyzing data and fitting envelope models........................................215 b. The 'nlrq' package for nonlinear quantile regression........................................246 Annex II: dataset of the cohort measured during seven years ..........................255 Annex III: abstracts of publications and symposia ............................................257 a. International journals ........................................................................................257 b. Reports and other publications..........................................................................262 c. International symposia.......................................................................................265 Table of contents 11
Table of contents 12
Page 1 and 2: U L B bio mar UNIVERSITE LIBRE DE B
Page 4 and 5: Acknowledgements ACKNOWLEDGEMENTS W
Page 6 and 7: Abstract ABSTRACT A rearing protoco
Page 8 and 9: Résumé RESUME Un protocole d'éle
Page 10 and 11: Table of contents TABLE OF CONTENTS
Page 14 and 15: List of figures LIST OF FIGURES Fig
Page 16 and 17: List of figures Figure 28. A. Histo
Page 18 and 19: List of tables LIST OF TABLES Table
Page 20 and 21: List of equations LIST OF EQUATIONS
Page 22 and 23: List of equations Equation 33. Para
Page 24 and 25: List of symbols LIST OF SYMBOLS Var
Page 26 and 27: List of symbols IW Immersed weight:
Page 28: Introduction 27
Page 31 and 32: Foreword 30
Page 33 and 34: General introduction this study. Se
Page 35 and 36: General introduction intense fishin
Page 37 and 38: General introduction habitats: inte
Page 39 and 40: General introduction substrate to s
Page 41 and 42: General introduction mm (Spirlet et
Page 43 and 44: Growth models General introduction
Page 45 and 46: . The logistic function for asympto
Page 47 and 48: d. The von Bertalanffy curves Gener
Page 49 and 50: Y Y 1 Y• 0.8 0.6 0.4 0.2 General
Page 51 and 52: Y 1 Y• 0.8 0.6 Y•êH1+bL 0.4 0.
Page 53 and 54: YY 3 2.5 2 1.5 1 0.5 General introd
Page 55 and 56: Table 1. Models used to fit sea urc
Page 57 and 58: General introduction model 1 for Ec
Page 59 and 60: General introduction method used. I
Page 61 and 62: General introduction Experiments in
Page 63 and 64:
Aim of the thesis 62
Page 66 and 67:
PART I: SET UP OF AN EXPERIMENTAL R
Page 68 and 69:
Land-based closed-cycle echinicultu
Page 70 and 71:
Aquaculture of echinoderms, includi
Page 72 and 73:
6b. exploitation KCl water renewal
Page 74 and 75:
earing cycle into seven stages is e
Page 76 and 77:
(Grosjean et al, 1996, see Part III
Page 78 and 79:
output. The quality of gametes is o
Page 80 and 81:
average value of 19.5 days, a minim
Page 82 and 83:
individuals were still alive 3 mont
Page 84 and 85:
e. Discussion show similar GI and M
Page 86 and 87:
The success of the present method l
Page 88 and 89:
Fenaux (1990) for the same species
Page 90 and 91:
encountered with food is its stabil
Page 92 and 93:
to Christine Spirlet (ref. ERB 4001
Page 94:
PART II Measurement for size in the
Page 97 and 98:
Part II: Measurement for size in th
Page 99 and 100:
Few studies have compared and discu
Page 101 and 102:
d. Results and discussion The ambit
Page 103 and 104:
Reproducibility of measurements The
Page 105 and 106:
e. Conclusions fresh weight! Cautio
Page 107 and 108:
principal axis 3 1 0.8 0.6 0.4 0.2
Page 109 and 110:
a relative homogeneous growth of al
Page 111 and 112:
110
Page 113 and 114:
Part III: Experimental studies of t
Page 115 and 116:
assumption of normality can be test
Page 117 and 118:
occurred. From this moment on, and
Page 119 and 120:
d. Results Size distribution among
Page 121 and 122:
Nber of ind. 120 100 80 60 40 20 0
Page 123 and 124:
Table 9. Statistics on the six batc
Page 125 and 126:
Table 10. Size distribution of Fe e
Page 127 and 128:
purpuratus; Dafni & Tobol, 1987: Tr
Page 129 and 130:
Nbr. of ind. Nbr. of ind. A. Size d
Page 131 and 132:
Nbr. of ind. Nbr. of ind. Nbr. d'in
Page 133 and 134:
Part III: Experimental studies of t
Page 135 and 136:
134
Page 137 and 138:
Part IV: A growth model with intras
Page 139 and 140:
. Introduction fuzzy-remanent funct
Page 141 and 142:
considered factor on the curve's sh
Page 143 and 144:
Diameter D 20 in mm Diameter D in m
Page 145 and 146:
d. Results Theoretical consideratio
Page 147 and 148:
some two-dimensional processes like
Page 149 and 150:
implements this method ('nlrq' pack
Page 151 and 152:
value just after metamorphosis (D0,
Page 153 and 154:
quantifies maximum speed growth, k2
Page 155 and 156:
Table 12. Results of quantile regre
Page 157 and 158:
This way, one obtains a 4-parameter
Page 159 and 160:
individuals related to the presence
Page 161 and 162:
Finally, ∆D∞ should follow a no
Page 163 and 164:
60 Diameter increase D' in mm 40 20
Page 165 and 166:
e. Discussion Fig. 34B shows three
Page 167 and 168:
Constraining parameters as we did i
Page 169 and 170:
It does not consider respiration as
Page 171 and 172:
this species. For other species, wh
Page 173 and 174:
ecapture, McDonald & Pitcher, 1979;
Page 175 and 176:
∆D∞ D0 +∆D∞ − D0 +∆D∞
Page 177 and 178:
evaluated on basis of biological kn
Page 179 and 180:
ain conceptualizes complex objects.
Page 181 and 182:
180
Page 183 and 184:
General conclusions individuals, wh
Page 185 and 186:
Root models: y’ = ay m -by n (exp
Page 187 and 188:
General conclusions - The diauxic g
Page 189 and 190:
General conclusions model not on a
Page 191 and 192:
References Baker, T.T., R. Lafferty
Page 193 and 194:
References Dafni, J. & R. Tobol, 19
Page 195 and 196:
References Ebert, T.A., 1999. Plant
Page 197 and 198:
References intermedius on a rocky s
Page 199 and 200:
References Guillou, M. & Ch. Michel
Page 201 and 202:
References Kobayashi, S. & J. Taki,
Page 203 and 204:
References McDonald, P.D. & T.J. Pi
Page 205 and 206:
References Pouvreau, S., C. Bacher
Page 207 and 208:
References Sellem, F., H. Langar &
Page 209 and 210:
References Stumm, W. & J.J. Morgan,
Page 211 and 212:
References Webster, S.K. & A.C. Gie
Page 213 and 214:
212
Page 215 and 216:
Annexes 214
Page 217 and 218:
# If no graphic device currently op
Page 219 and 220:
lines(edatq[, 1], predict(edat.025,
Page 221 and 222:
SimRes
Page 223 and 224:
Annexes Code of functions required
Page 225 and 226:
plot(cumsum(dat[,columns[1]])/sum(d
Page 227 and 228:
for the CI!!! Annexes SEMean
Page 229 and 230:
} Annexes # - y, a vector of classe
Page 231 and 232:
plot(x, y, type="l", col=col, lty=l
Page 233 and 234:
} Annexes } results[i, 1:5]
Page 235 and 236:
} .value Annexes dimnames(.grad)
Page 237 and 238:
#{ # # This is adapted from SSasymp
Page 239 and 240:
Exp.ival
Page 241 and 242:
SSallo
Page 243 and 244:
.expr4
Page 245 and 246:
.expr9
Page 247 and 248:
. The 'nlrq' package for nonlinear
Page 249 and 250:
nlrq.control package:nlrq R Documen
Page 251 and 252:
gradSetArgs[[2]]), call("[", gradSe
Page 253 and 254:
model.step
Page 255 and 256:
Annexes 254
Page 257 and 258:
Annexes 256
Page 259 and 260:
Annexes metamorphosis. Acquisition
Page 261 and 262:
Annexes ABSTRACT: The general allom
Page 263 and 264:
Annexes libitum for 8, 16, 24, 32,
Page 265 and 266:
Annexes EXECUTIVE SUMMARY: The aim
Page 267 and 268:
Annexes KEYWORDS: Somatic growth, d
Page 269 and 270:
Annexes amount of waste produced at
Page 271 and 272:
Annexes ABSTRACT: Multimodal distri
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Growth model of the reared sea urchin Paracentrotus ... - SciViews

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