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ReferencesAraújo, M.B., P.H. Williams and A. Turner. 2002. “A sequential approach to minimizethreats within selected conservation areas.” Biodiversity and Conservation 11: 1011-1024.Ball, I. R. and H. P. Possingham, (2000) MARXAN (V1.8.2): Marine Reserve DesignUsing Spatially Explicit Annealing, a ManualConvention on Biological Diversity, 2001, Global Biodiversity Outlook, CBD, Montreal,CanadaDudley, N and J. Parrish, 2006, Closing the Gap. Creating ecologically representativeprotected area systems: A guide to conducting gap assessments of protected areasystems for the Convention on Biological Diversity, Secretariat of the Convention onBiological Diversity, Montreal, Technical Series no. 24, vi + 108 pages.Ervin, J. and J. Parrish. 2006. “Toward a Framework for Conducting Ecoregional ThreatsAssessments.” In: Monitoring Science and Technology Symposium: UnifyingKnowledge for Sustainability in the Western Hemisphere Proceedings, C. Aguirre-Bravo, J. P. Pellicane, P. D. Burns, and S. Draggan, eds. Fort Collins, CO: U.S.Department of Agriculture, Forest Service, Rocky Mountain Research Station. p. 105-112Ferdana, Z., 2006, Personal communication.Game, E. T. and H. S. Grantham. (2008). Marxan Us er Manual: For Marx an version1.8.10. University of Queenslan d, St. Lucia, Queensland, Australia, and PacificMarine Analysis and Research Association, Vancouver, British Columbia, CanadaHu ggins, A., 2006, Personal communication.Huggins, A., 2005, Marxan Conservation Planning Decision Support Software Tutorialfor GIS Begin ners. The Nature Conservancy. 18 pages.Huggins, A.E., S. Keel, P. Kramer, F. Núñez, S. Schil l, R. Jeo, A. Chatw in, K. Thurlow,M. McPearson , M. Libby, R. Tingey, M. Palmer and R. Seybert 2007. BiodiversityConservation Assessment of the Insular Caribbe an Using the Caribbean Decis ionSupport System, Technical Repo rt, The Nature Con servancy.Pressey, R.L. & Logan, V.S., 1998, Size of selection units for future reserves and itsinfluence on actual vs. targeted representation of features: a case study in WesternNew south Wales. Biological Conservation, 85, 305-319.TNC Protected Area Tools (PAT) Version 3.0The Nature Conservancy, August 200974
McPherson, M, S. Schill, G. Raber, K. John, N. Zenny, K. Thurlow, and A. Sutton, 2008"GIS-Based Modeling of Environmental Risk Surfaces (ERS) for ConservationPlanning in Jamaica," Journal of Conservation Planning, Vol 4:60-89Possingham, H. P., I. R. Ball and S. Andelman (2000) Mathematical methods foridentifying representative reserve networks. In: S. Ferson and M. Burgman (eds)Quantitative methods for conservation biology. Springer-Verlag, New York, pp. 291-305.Schill, S., 2005, Coastal Transport Modeling Using HYCOM Data, Proceedings of the 8International Conference on Remote Sensing for Marine and Coastal Environments,May 17-19, Halifax, Nova Scotia.Theobald, D.M. 2003. “Targeting conservation action through assessment of protectionand exurban threats.” Conservation Biology 17: 1624-1637.TheNature Conservancy, 2006, South America Threat Assessment, Arlington, VA.The Nature Conservancy, 2005, A Regional Conservation Assessment for the GreaterCaribbean Basin, Arlington, VA.The Nature Conservancy, 2003, Alaska-Yukon Arctic Ecoregional Assessment.Zenny, N., 2006, Technical Summary of the Jamaica Ecoregional Planning (JERP)Marine Analysis, The Nature Conservancy, Kingston, Jamaica, 16 pages.thTNC Protected Area Tools (PAT) Version 3.0The Nature Conservancy, August 200975
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Protected Area Tools (PAT)TMfor Arc
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AcknowledgementsThe idea for the de
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Mandatory Requirements Needed to Ru
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Installing the Protected Area Tools
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The majority of the work that goes
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data to spatially represent the spe
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2003, Araújo et al. 2002). In some
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1.1 Setting up the ERS TableSuccess
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1.1.1 Overlay FunctionAnother item
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features have been added to the map
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the output will automatically defau
Page 23 and 24: Once you click OK in the previous m
Page 25 and 26: unit or feature (i.e. polygon) must
Page 27 and 28: higher elevations and ridges moving
Page 29 and 30: 1.3.4.2 Marine ERS ModelsDeveloping
Page 31 and 32: MODULE 2. Relative Biodiversity Ind
Page 33 and 34: Normalized relative biodiversity in
Page 35 and 36: EXERCISE 2. Calculating the Relativ
Page 37 and 38: the targets (polygons with lots of
Page 39 and 40: Once this step is performed, you ca
Page 41 and 42: This selection routine will choose
Page 43 and 44: 3.0 The MARXAN AlgorithmOne of the
Page 45 and 46: 6. All input features must have the
Page 47 and 48: grid of squares or lattice of hexag
Page 49 and 50: • To make "area" and "length" com
Page 51 and 52: Sug gested steps for preparing inpu
Page 53 and 54: 2. Planning Unit File (pu.dat)This
Page 55 and 56: ‘id2’ are set but no value for
Page 57 and 58: conservation target files are alrea
Page 59 and 60: An example of what an attribute tab
Page 61 and 62: values. These values will be used i
Page 63 and 64: Occurrence (OCC), Minimum Clump (CL
Page 65 and 66: 3.2.4 Combining Marxan Input FilesI
Page 67 and 68: 2. Click onto the Run Options tab p
Page 69 and 70: This is the folder where the output
Page 71 and 72: 3.4 Joining and Displaying Marxan O
Page 73: Figure 12. Results of joining the t
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