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Changes in bacterial abundance and biomass... / Ovidius University Annals, Biology-Ecology Series 14: 139-145 (2010) [3] ŠESTANOVIĆ, S., SOLIĆ, M., KRUSTULOVIĆ, N., BOGNER, D., 2005 – Volume, abundance and biomass of sediment bacteria in the eastern mid Adriatic Sea. Acta Adriat. 46: 177-191. [4] RÖLING, W.F.M., MILNER, M.G., JONES, D.M., LEE, K., DANIEL, F., SWANNELL, R.J.P., HEAD, I.M., 2002 – Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Appl. Environ. Microbiol. 68: p. 5537-5548. [5] MIRALLES, G., NÉRINI, D., MANTÉ, C., ACQUAVIVA, M., DOUMENQ, P., MICHOTEY, V., NAZARET, S., BERTRAND, J.C., CUNY, P., 2007 – Effects of spilled oil on bacterial communities of Mediterranean coastal anoxic sediments chronically subjected to oil hydrocarbon contamination. Microb. Ecol. 54: 646-661. [6] FISH, K.M., PRINCIPE, J.M. 1994 – Biotransformations of Aroclor 1242 in Hudson River test tube microcosms. Appl. Environ. Microbiol. 60: 4289-4296. [7] SCHALLENBERG, M., KALFF, J., RASMUSSEN, J.B., 1989 – Solutions to problems in enumerating sediment bacteria by direct counts. Appl. Environ. Microbiol. 55: 1214-1219. [8] FRY, J.C., 1990 – Direct methods and biomass estimation. Meth. Microbiol. 22: 41-85. [9] EPSTEIN, S.S., ALEXANDER, D., COSMAN, K., DOMPÉ, A., GALLAGHER, S., JARSOBSKI, J., LANING, E., MARTINEZ, R., PANASIK, G., PELUSO, C., RUNDE, R., TIMMER, E., 1997 – Enumeration of sandy sediment bacteria: Are the counts quantitative or relative? Mar. Ecol. Prog. Ser. 151: 11-16. [10] LUNA, G.M., MANINI, E., DANOVARO, R., 2002 – Large fraction of dead and inactive bacteria in coastal marine sediments: comparison of protocols for determination and ecological significance. Appl. Environ. Microbiol. 68: 3509-3513. [11] FALLON, R.D., NEWELL, S.Y., HOPKINSON, C.S., 1983 – Bacterial production in marine sediments: will cell- 144 specific measures agree with whole-system metabolism? Mar. Ecol. Prog. Ser. 11: 119-127. [12] ELLERY, W.N., SCHLEYER, M.H., 1984 – Comparison of homogenization and ultrasonication as techniques in extracting attached sedimentary bacteria. Mar. Ecol. Prog. Ser. 15: 247-250. [13] EPSTEIN, S.S., ROSSEL, J., 1995 – Enumeration of sandy sediment bacteria: search for optimal protocol. Mar. Ecol. Prog. Ser 117: 289-298. [14] KUWAE, T., HOSOKAWA, Y., 1999 – Determination of abundance and biovolume of bacteria in sediments by dual staining with 4’,6diamidino-2-phenylindole and acridine orange: relationship to dispersion treatment and sediment characteristics. Appl. Environ. Microbiol. 65: 3407-3412. [15] BENNETT, P.C., ENGEL, A.S., ROBERTS, J.A., 2006 – Counting and imaging bacteria on mineral surfaces. in Patricia, J., Maurice, A., Warren, L.A. (eds.). Methods of Investigating Microbial-Mineral Interactions. CMS Workshop Lectures, Vol. 14: 37-78, The Clay Mineral Society, Chantilly. [16] SHERR, B., SHERR, E., DEL GIORGIO, P., 2001 – Enumeration of total and highly active bacteria. Meth. Microbiol. 30: 129-159. [17] KEPNER, R.L., PRATT, J.R., 1994 – Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present. Microbiol. Rev. 58: 603-615. [18] MCFETERS, G.A., YU, F.P., PYLE, B.H., STEWART, P.S., 1995 – Physiological assessment of bacteria using fluorochromes. J. Microbiol. Meth. 21: 1-13. [19] WATSON, S.W., NOVITSKY, T.J., QUINBY, H.L., VALOIS, F.W., 1977 – Determination of bacterial number and biomass in the marine environment. Appl. Environ. Microbiol. 33: 940-946. [20] MONTAGNA, P.A., 1982 – Sampling design and enumeration statistics for bacteria extracted from marine sediments. Appl. Environ. Microbiol. 43: 1366-1372. [21] COLLINS, T.J., 2007 – ImageJ for microscopy. BioTechniques 43: 25-30.
Dan Răzvan Popoviciu, Ioan Ardelean / Ovidius University Annals, Biology-Ecology Series 14: 139-145 (2010) [22] GOUGH, H.L., STAHL, D.A., 2003 – Optimization of direct cell counting in sediment. J. Microbiol. Meth. 52: 39-46. [23] LOFERER-KRÖßBACHER, M., KLIMA, J., PSENNER, R., 1998 – Determination of bacterial cell dry mass by transmission electron microscopy and densitometric image analysis. Appl. Environ. Microbiol. 64: 688-694. [24] BAKKEN, L.R., OLSEN, R.A., 1983 – Buoyant densities and dry-matter contents of microorganisms: conversion of a measured biovolume into biomass. Appl. Environ. Microbiol. 45: 1188-1195. [25] HYMEL, S.N., PLANTE, C.J., 1998 – Improved method of bacterial enumeration in sandy and deposit-feeder gut sediments using the fluorescent stain 4,6-diamidino-2phenylindole (DAPI). Mar. Ecol. Prog. Ser. 173: 299-304. [26] PROCTOR, L.M., SOUZA, A.C., 2001 – Method for enumeration of 5-cyano-3,2-ditoyl tetrazolium chloride (CTC)- active cells and cell-specific CTC activity of benthic bacteria in riverine, estuarine and coastal sediments. J. Microbiol. Meth. 43: 213-222. [27] FERRARA-GUERRERO, M.J., CASTELLANOS-PAÉZ, M.E., GARZA- MOURIÑO, G., 2007 – Variation of a benthic heterotrophic bacteria community with different respiratory metabolisms in Coyuca de Benitez coastal lagoon (Guerrero, Mexico). Rev. Biol. Trop. (Int. J. Trop. Biol.) 55: 157-169. [28] DIETRICH, D., ARNDT, H., 2000 – Biomass partitioning of benthic microbes in a Baltic inlet: relationships between bacteria, algae, heterotrophic flagellates and ciliates. Mar. Biol. 136: 309-322. [29] DANOVARO, R., FABIANO, M., BOYER, M., 1994 – Seasonal changes of benthic bacteria in a seagrass bed (Posidonia oceanica) of the Ligurian Sea in relation to origin, composition and fate of the sediment organic matter. Mar. Biol. 119: 489-500. [30] PUSCEDDU, A., FIORDELMONDO, C., DANOVARO, R., 2005 – Sediment resuspension effects on the benthic microbial loop in experimental microcosms. Microb. Ecol. 50: 602-613. 145 [31] LUNAU, M., LEMKE, A., WALTHER, K., 2005 – An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ. Microbiol. 7: 961-968. [32] ZWEIFEL, U.L., HAGSTRÖM, Å., 1995 – Total counts of marine bacteria include a large fraction of non-nucleoid-containing bacteria (ghosts). Appl. Environ. Microbiol. 61: 2180- 2185. [33] HIGASHIHARA, T., SATO, A., SIMIDU, U., 1978 – An MPN method for the enumeration of marine hydrocarbon degrading bacteria. Bull. Japan. Soc. Sci. Fish. 44: 1127-1134. [34] HAZEN, T.C., 2010 – Biostimulation, in Timmis, K.N. (ed.). Handbook of Hydrocarbon and Lipid Microbiology, 4517-4530, Springer- Verlag Berlin Heidelberg. [35] MUDRYK, Z.J., PODGÓRSKA, B., 2006 – Scanning electron microscopy investigation of bacterial colonization of marine beach sand grains. Baltic Coastal Zone 10: 61-72. [36] POPOVICIU, D.R., 2009 – Aspecte cantitative şi morfo-structurale ale microbiotei din sedimente marine nisipoase de la litoralul românesc al Mării Negre. Master’s thesis, Ovidius University of Constanţa, Faculty of Natural Sciences and Agricultural Sciences.
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Ovidius University Annals of Natura
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VOLUM OMAGIAL - Facultatea de Ştiinţe ale Naturii şi Ştiinţe Agricole

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