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Scientific and Technical Aerospace Reports Volume 39 April 6, 2001

Scientific and Technical Aerospace Reports Volume 39 April 6, 2001

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sions: In the greater residential areas, the overall rating sound level does not exceed 53 dB(A). In the future this level might<br />

decrease by 1 dB.<br />

Author<br />

Sound Propagation; Guns (Ordnance); Gunfire<br />

<strong>2001</strong>0022795 Institute TNO of Applied Physics, Delft, Netherl<strong>and</strong>s<br />

Literature Study on the Modelling of Target Echo Strength Final Report<br />

Giling, E. J. M., Institute TNO of Applied Physics, Netherl<strong>and</strong>s; Aug. 25, 2000; 32p; In English<br />

Contract(s)/Grant(s): A97/KM/125; TNO Proj. 008.00762<br />

Report No.(s): HAI-RPT-990015; TD-990308; Copyright; Avail: Issuing Activity<br />

In this document, the results of a literature study <strong>and</strong> software search on the numerical modelling of Target Echo Strength<br />

(also ”TES”, ”Target Strength” or ”TS”) are reported.<br />

Author<br />

Mathematical Models; Echoes; Computer Programs<br />

262<br />

72<br />

ATOMIC AND MOLECULAR PHYSICS<br />

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<strong>2001</strong>0022632 Stanford Univ., Center for Turbulence Research, Stanford, CA USA<br />

Calculating Free Energies Using Scaled-Force Molecular Dynamics Algorithm<br />

Darve, Eric, Stanford Univ., USA; Wilson, Micahel A., NASA Ames Research Center, USA; Pohorille, Andrew, NASA Ames<br />

Research Center, USA; Annual Research Briefs - 2000: Center for Turbulence Research; December 2000, pp. 3-16; In English;<br />

See also <strong>2001</strong>0022631; No Copyright; Avail: CASI; A03, Hardcopy; A03, Microfiche<br />

One common objective of molecular simulations in chemistry <strong>and</strong> biology is to calculate the free energy difference between<br />

different states of the system of interest. Examples of problems that have such an objective are calculations of receptor-lig<strong>and</strong> or<br />

protein-drug interactions, associations of molecules in response to hydrophobic, <strong>and</strong> electrostatic interactions or partition of molecules<br />

between immiscible liquids. Another common objective is to describe evolution of the system towards a low energy (possibly<br />

the global minimum energy), ’native’ state. Perhaps the best example of such a problem is folding of proteins or short RNA<br />

molecules. Both types of problems share the same difficulty. Often, different states of the system are separated by high energy<br />

barriers, which implies that transitions between these states are rare events. This, in turn, can greatly impede exploration of phase<br />

space. In some instances this can lead to ’quasi non-ergodicity’, whereby a part of phase space is inaccessible on timescales of<br />

the simulation. A host of strategies has been developed to improve efficiency of sampling the phase space. For example, some<br />

Monte Carlo techniques involve large steps which move the system between low-energy regions in phase space without the need<br />

for sampling the configurations corresponding to energy barriers (J-walking). Most strategies, however, rely on modifying probabilities<br />

of sampling low <strong>and</strong> high-energy regions in phase space such that transitions between states of interest are encouraged.<br />

Perhaps the simplest implementation of this strategy is to increase the temperature of the system. This approach was successfully<br />

used to identify denaturation pathways in several proteins, but it is clearly not applicable to protein folding. It is also not a successful<br />

method for determining free energy differences. Finally, the approach is likely to fail for systems with co-existing phases, such<br />

as water-membrane systems, because it may lead to spontaneous mixing. A similar difficulty may be encountered in any method<br />

relying on global modifications of phase space.<br />

Author<br />

Algorithms; Free Energy; Molecular Dynamics; Mathematical Models<br />

<strong>2001</strong>0026183 Oak Ridge National Lab., TN USA<br />

Neutron Total Cross Sections of U-235 From Transmission Measurements in the Energy Range 2 keV to 300 keV <strong>and</strong> Statistical<br />

Model Analysis of the Data<br />

Derrien, H.; Harvey, J. A.; Larson, N. M.; Leal, L. C.; Wright, R. Q.; May 01, 2000; 44p; In English<br />

Report No.(s): DE00-763240; ORNL/TM-2000/129; No Copyright; Avail: Department of Energy Information Bridge

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