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EPA's Vessel General Permit and Small Vessel General

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ating of conservation value for the species.<br />

Final Protective Regulations<br />

On June 28, 2005, as part of the final listing determinations for 16 ESUs of West Coast salmon,<br />

NMFS amended <strong>and</strong> streamlined the 4(d) protective regulations for threatened salmon <strong>and</strong><br />

steelhead (70 FR 37160) as described in the Protective Regulations for Threatened Salmonid<br />

Species section of this document. Under this change, the section 4(d) protections apply to<br />

natural <strong>and</strong> hatchery fish with an intact adipose fin, but not to listed hatchery fish that have had<br />

their adipose fin removed prior to release into the wild. The amended June 2005 4(d) rule<br />

applies to the Central California Coast steelhead DPS.<br />

California Central Valley Steelhead<br />

Distribution <strong>and</strong> Description of the Listed Species<br />

California Central Valley steelhead salmon occupy the Sacramento <strong>and</strong> San Joaquin Rivers <strong>and</strong><br />

their tributaries, although they were once widespread throughout the Central Valley (Busby et al.<br />

1996, Zimmerman et al. 2009). Steelhead were found from the upper Sacramento <strong>and</strong> Pit River<br />

systems (now inaccessible due to Shasta <strong>and</strong> Keswick Dams), south to the Kings <strong>and</strong> possibly<br />

the Kern River systems (now inaccessible due to extensive alteration from water diversion<br />

projects), <strong>and</strong> in both east- <strong>and</strong> west-side Sacramento River tributaries (Yoshiyama et al. 1996).<br />

The present distribution has been greatly reduced (McEwan <strong>and</strong> Jackson 1996). The CACSS<br />

(1988) reported a reduction of steelhead habitat from 6,000 miles historically to 300 miles today.<br />

Historically, steelhead probably ascended Clear Creek past the French Gulch area, but access to<br />

the upper basin was blocked by Whiskeytown Dam in 1964 (Yoshiyama et al. 1996). Steelhead<br />

also occurred in the upper drainages of the Feather, American, Yuba <strong>and</strong> Stanislaus Rivers which<br />

are now inaccessible (McEwan <strong>and</strong> Jackson 1996, Yoshiyama et al. 1996).<br />

Existing wild steelhead populations in the Central Valley are mostly confined to the upper<br />

Sacramento River <strong>and</strong> its tributaries, including Antelope, Deer, <strong>and</strong> Mill Creeks <strong>and</strong> the Yuba<br />

River. Populations may exist in Big Chico <strong>and</strong> Butte Creeks <strong>and</strong> a few wild steelhead are<br />

produced in the American <strong>and</strong> Feather Rivers (McEwan <strong>and</strong> Jackson 1996). Recent snorkel<br />

surveys (1999 to 2002) indicate that steelhead are present in Clear Creek (Good et al. 2005).<br />

Because of the large resident O. mykiss population in Clear Creek, steelhead spawner abundance<br />

has not been estimated. Until recently, steelhead were thought to be extirpated from the San<br />

Joaquin River system. Recent monitoring has detected small self-sustaining populations of<br />

steelhead in the Stanislaus, Mokelumne, Calaveras, <strong>and</strong> other streams previously thought to be<br />

void of steelhead (McEwan 2001). On the Stanislaus River, steelhead smolts have been captured<br />

in rotary screw traps at Caswell State Park <strong>and</strong> Oakdale each year since 1995 (Demko <strong>and</strong><br />

Cramer 2000). It is possible that naturally spawning populations exist in many other streams but<br />

are undetected due to lack of monitoring programs.<br />

The Sacramento <strong>and</strong> San Joaquin Rivers offer the only migration route to the drainages of the<br />

Sierra Nevada <strong>and</strong> southern Cascade mountain ranges for anadromous fish. The CDFG<br />

considers all steelhead in the Central Valley as winter steelhead, although “three distinct runs,”<br />

including summer steelhead, may have occurred there as recently as 1947 (McEwan <strong>and</strong> Jackson<br />

107

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