Principles of Fluorescence Spectroscopy

More documents

Recommendations

Info

PRINCIPLES OF FLUORESCENCE SPECTROSCOPY 351 87. Klos J, Molski A. 2004. Global analysis of kinetic and stationary diffusion-mediated fluorescence quenching data. J Phys Chem A 108:2370–2374. 88. Kusba J. 1998. Personal communication. 89. Zelent B, Gryczynski I, Kusba J, Johnson ML, Lakowicz JR. 1992. Distance-dependent fluorescence quenching of N-acetyl-L-tryptophanamide by acrylamide and iodide. Proc SPIE 2137:412–424. 90. Lakowicz JR, Joshi NB, Johnson ML, Szmacinski H, Gryczynski I. 1987. Diffusion coefficients of quenchers in proteins from transient effects in the intensity decays. J Biol Chem 262(23):10907–10910. 91. Eftink MR. 1990. Transient effects in the solute quenching of tryptophan residues in proteins. SPIE Proc 1204:406–414. 92. Lakowicz JR, Kusba J, Szmacinski H, Johnson ML, Gryczynski I. 1993. Distance-dependent fluorescence quenching observed by frequency-domain fluorometry. Chem Phys Lett 206(5,6):455–463. 93. Zelent B, Kusba J, Gryczynski I, Lakowicz JR. 1995. Distancedependent quenching of anthracene fluorescence by N,N-diethylaniline observed by frequency-domain fluorometry. Appl Spectrosc 49(1):43–50. 94. Vanderkooi JM, Englander SW, Papp S, Wright WW, Owen CS. 1990. Long-range electron exchange measured in proteins by quenching of tryptophan phosphorescence. Proc Natl Acad Sci 87:5099–5103. PROBLEMS Figure 9.33. Emission spectra of DMN-6-Py and DMN-6-Py-Me in ethanol glass at 77°K. Revised from [56]. P9.1. Calculation of an Oxidation Potential for a Fluorophore: Figures 9.17 and 9.18 show that PET occurs from 1,8-naphthalimide to methylviologen. Calculate the maximum value of the reduction potential E(D + /D) for the fluorophore above which PET would not occur. The reduction potential of MV 2+ is 0.4 V. The wavelength of the lowest electronic transition is 365 nm. P9.2. Figure 9.33 shows emission spectra of two compounds. The short- and long-wavelength emissions are due to the fluorescence and phosphorescence of the dimethoxynaphthalene moiety. Explain the different fluorescence intensities of the two compounds.
10 Measurements of fluorescence anisotropy are a powerful tool in biochemical research and medical testing. Upon excitation with polarized light the emission from many samples is also polarized. The extent of polarization of the emission is described in terms of the anisotropy (r). Samples exhibiting nonzero anisotropies are said to display polarized emission. The origin of anisotropy is the existence of transition moments for absorption and emission that lie along specific directions within the fluorophore structure. In homogeneous solution the ground-state fluorophores are all randomly oriented. When exposed to polarized light, those fluorophores that have their absorption transition moments oriented along the electric vector of the incident light are preferentially excited. Hence the excitedstate population is partially oriented. A significant fraction of the excited molecules have their transition moments oriented along the electric vector of the polarized exciting light. The emission can become depolarized by a number of processes, the relative importance of which depends upon the sample under investigation. All chromophores have transition moments that occur along a specific direction in the molecular axis. Rotational diffusion changes the direction of the transition moments and is one common cause of depolarization. Anisotropy measurements reveal the average angular displacement of the fluorophore that occurs between absorption and subsequent emission of a photon. This angular displacement is dependent upon the rate and extent of rotational diffusion during the lifetime of the excited state. The rate of rotational diffusion depends on the viscosity of the solvent and the size and shape of the rotating molecule. The rotational rate of fluorophores in solution is dependent upon the viscous drag imposed by the solvent. A change in solvent viscosity will result in a change in fluorescence anisotropy. For small fluorophores in low-viscosity solutions the rate of rotational diffusion is typically faster than the rate of emission. Under these conditions the emission is depolarized and the anisotropy close to zero. Fluorescence Anisotropy The dependence of fluorescence anisotropy upon fluorophore motions has resulted in numerous applications of this technique in biochemical research. This is because the timescale of rotational diffusion of biomolecules is comparable to the decay time of many fluorophores. For instance, a protein with a molecular weight of 25 kD can be expected to have a rotational correlation time near 10 ns. This is comparable to the lifetime of many fluorophores. Hence factors that alter the rotational correlation time will also alter the anisotropy. For biomolecules the anisotropy is decreased due to both rotational diffusion and internal flexibility. As examples we note that fluorescence anisotropy measurements have been used to quantify protein denaturation, which usually results in increased flexibility of the peptide backbone, and protein association with other macromolecules, which changes the overall rate of rotation. Anisotropy measurements can also be used to measure the dynamics of proteins. The anisotropies of membrane-bound fluorophores have been used to estimate the internal viscosities of membranes and the effects of lipid composition upon the membrane phase-transition temperature. In addition, anisotropy measurements are widely used in clinical chemistry in the form of fluorescence-polarization immunoassays. In this chapter we describe the fundamental theory for steady-state measurements of fluorescence anisotropy. We also describe selected biochemical applications. In the subsequent chapters we will describe time-resolved anisotropy measurements and advanced applications. 10.1. DEFINITION OF FLUORESCENCE ANISOTROPY The measurement of fluorescence anisotropy is illustrated in Figure 10.1. For most experiments the sample is excited with vertically polarized light. The electric vector of the excitation light is oriented parallel to the vertical or z-axis. The intensity of the emission is measured through a polar- 353
Page 1 and 2:
Principles of Fluorescence Spectros
Page 3 and 4:
Joseph R. Lakowicz Center for Fluor
Page 5 and 6:
Preface The first edition of Princi
Page 7 and 8:
x GLOSSARY OF ACRONYMS DNS dansyl o
Page 9 and 10:
xii GLOSSARY OF ACRONYMS TRES time-
Page 11 and 12:
xiv GLOSSARY OF MATHEMATICAL TERMS
Page 13 and 14:
xvi CONTENTS 2.9.4. Conversion betw
Page 15 and 16:
xviii CONTENTS 6. Solvent and Envir
Page 17 and 18:
xx CONTENTS 10.4.4. Alignment of Po
Page 19 and 20:
xxii CONTENTS 14.7.1. Simulations o
Page 21 and 22:
xxiv CONTENTS 19.12. New Approaches
Page 23 and 24:
xxvi CONTENTS 25.3. Optical Propert
Page 25 and 26:
2 INTRODUCTION TO FLUORESCENCE Figu
Page 27 and 28:
Page 29 and 30:
6 INTRODUCTION TO FLUORESCENCE inst
Page 31 and 32:
Page 33 and 34:
10 INTRODUCTION TO FLUORESCENCE Fig
Page 35 and 36:
12 INTRODUCTION TO FLUORESCENCE ns,
Page 37 and 38:
14 INTRODUCTION TO FLUORESCENCE 1.7
Page 39 and 40:
Page 41 and 42:
Page 43 and 44:
Page 45 and 46:
Page 47 and 48:
24 INTRODUCTION TO FLUORESCENCE due
Page 49 and 50:
Page 51 and 52:
28 INSTRUMENTATION FOR FLUORESCENCE
Page 53 and 54:
Page 55 and 56:
Page 57 and 58:
Page 59 and 60:
Page 61 and 62:
Page 63 and 64:
Page 65 and 66:
Page 67 and 68:
Page 69 and 70:
Page 71 and 72:
Page 73 and 74:
Page 75 and 76:
Page 77 and 78:
Page 79 and 80:
Page 81 and 82:
Page 83 and 84:
Page 85 and 86:
3 Fluorescence probes represent the
Page 87 and 88:
PRINCIPLES OF FLUORESCENCE SPECTROS
Page 89 and 90:
Page 91 and 92:
Page 93 and 94:
Page 95 and 96:
Page 97 and 98:
Page 99 and 100:
Page 101 and 102:
Page 103 and 104:
Page 105 and 106:
Page 107 and 108:
Page 109 and 110:
Page 111 and 112:
Page 113 and 114:
Page 115 and 116:
Page 117 and 118:
Page 119 and 120:
98 TIME-DOMAIN LIFETIME MEASUREMENT
Page 121 and 122:
100 TIME-DOMAIN LIFETIME MEASUREMEN
Page 123 and 124:
Page 125 and 126:
Page 127 and 128:
Page 129 and 130:
Page 131 and 132:
Page 133 and 134:
Page 135 and 136:
Page 137 and 138:
Page 139 and 140:
Page 141 and 142:
Page 143 and 144:
Page 145 and 146:
Page 147 and 148:
Page 149 and 150:
Page 151 and 152:
Page 153 and 154:
Page 155 and 156:
Page 157 and 158:
Page 159 and 160:
Page 161 and 162:
Page 163 and 164:
Page 165 and 166:
Page 167 and 168:
Page 169 and 170:
Page 171 and 172:
Page 173 and 174:
Page 175 and 176:
Page 177 and 178:
5 In the preceding chapter we descr
Page 179 and 180:
Page 181 and 182:
Page 183 and 184:
Page 185 and 186:
Page 187 and 188:
Page 189 and 190:
Page 191 and 192:
Page 193 and 194:
Page 195 and 196:
Page 197 and 198:
Page 199 and 200:
Page 201 and 202:
Page 203 and 204:
Page 205 and 206:
Page 207 and 208:
Page 209 and 210:
Page 211 and 212:
Page 213 and 214:
Page 215 and 216:
Page 217 and 218:
Page 219 and 220:
Page 221 and 222:
Page 223 and 224:
Page 225 and 226:
6 Solvent polarity and the local en
Page 227 and 228:
Page 229 and 230:
Page 231 and 232:
Page 233 and 234:
Page 235 and 236:
Page 237 and 238:
Page 239 and 240:
Page 241 and 242:
Page 243 and 244:
Page 245 and 246:
Page 247 and 248:
Page 249 and 250:
Page 251 and 252:
Page 253 and 254:
Page 255 and 256:
Page 257 and 258:
238 DYNAMICS OF SOLVENT AND SPECTRA
Page 259 and 260:
Page 261 and 262:
Page 263 and 264:
Page 265 and 266:
Page 267 and 268:
Page 269 and 270:
Page 271 and 272:
Page 273 and 274:
Page 275 and 276:
Page 277 and 278:
Page 279 and 280:
Page 281 and 282:
Page 283 and 284:
Page 285 and 286:
Page 287 and 288:
Page 289 and 290:
Page 291 and 292:
Page 293 and 294:
Page 295 and 296:
Page 297 and 298:
278 QUENCHING OF FLUORESCENCE 8.1.
Page 299 and 300:
280 QUENCHING OF FLUORESCENCE Figur
Page 301 and 302:
282 QUENCHING OF FLUORESCENCE ly ev
Page 303 and 304:
Page 305 and 306:
Page 307 and 308:
Page 309 and 310:
290 QUENCHING OF FLUORESCENCE relat
Page 311 and 312:
Page 313 and 314:
Page 315 and 316:
Page 317 and 318:
298 QUENCHING OF FLUORESCENCE σ ar
Page 319 and 320: 300 QUENCHING OF FLUORESCENCE Figur
Page 339 and 340: 320 QUENCHING OF FLUORESCENCE 47. R
Page 341 and 342: 322 QUENCHING OF FLUORESCENCE 113.
Page 347 and 348: 328 QUENCHING OF FLUORESCENCE P8.3.
Page 349 and 350: 330 QUENCHING OF FLUORESCENCE P8.11
Page 351 and 352: 332 MECHANISMS AND DYNAMICS OF FLUO
Page 369: 350 MECHANISMS AND DYNAMICS OF FLUO
Page 373 and 374: PRINCIPLES OF FLUORESCENCE SPECTROS
Page 401 and 402: 11 In the preceding chapter we desc
Page 421 and 422:
Page 423 and 424:
Page 425 and 426:
Page 427 and 428:
Page 429 and 430:
Page 431 and 432:
12 In the preceding two chapters we
Page 433 and 434:
Page 435 and 436:
Page 437 and 438:
Page 439 and 440:
Page 441 and 442:
Page 443 and 444:
Page 445 and 446:
Page 447 and 448:
Page 449 and 450:
Page 451 and 452:
Page 453 and 454:
Page 455 and 456:
Page 457 and 458:
Page 459 and 460:
Page 461 and 462:
444 ENERGY TRANSFER Figure 13.1. Fl
Page 463 and 464:
446 ENERGY TRANSFER wavelength is e
Page 465 and 466:
448 ENERGY TRANSFER Table 13.1. Cal
Page 467 and 468:
450 ENERGY TRANSFER Figure 13.6. Ab
Page 469 and 470:
452 ENERGY TRANSFER safe for many p
Page 471 and 472:
454 ENERGY TRANSFER Figure 13.12. P
Page 473 and 474:
456 ENERGY TRANSFER Figure 13.16. E
Page 475 and 476:
458 ENERGY TRANSFER Figure 13.21. R
Page 477 and 478:
460 ENERGY TRANSFER Figure 13.24. R
Page 479 and 480:
462 ENERGY TRANSFER tiple acceptors
Page 481 and 482:
464 ENERGY TRANSFER Figure 13.29. A
Page 483 and 484:
466 ENERGY TRANSFER Figure 13.33. F
Page 485 and 486:
468 ENERGY TRANSFER Table 13.3. Rep
Page 487 and 488:
470 ENERGY TRANSFER 55. Clegg RM. 1
Page 489 and 490:
472 ENERGY TRANSFER Tong AK, Jockus
Page 491 and 492:
474 ENERGY TRANSFER Figure 13.39. O
Page 493 and 494:
14 In the previous chapter we descr
Page 495 and 496:
Page 497 and 498:
Page 499 and 500:
Page 501 and 502:
Page 503 and 504:
Page 505 and 506:
Page 507 and 508:
Page 509 and 510:
Page 511 and 512:
Page 513 and 514:
Page 515 and 516:
Page 517 and 518:
Page 519 and 520:
Page 521 and 522:
Page 523 and 524:
15 In the previous two chapters on
Page 525 and 526:
Page 527 and 528:
Page 529 and 530:
Page 531 and 532:
Page 533 and 534:
Page 535 and 536:
Page 537 and 538:
Page 539 and 540:
Page 541 and 542:
Page 543 and 544:
Page 545 and 546:
16 The biochemical applications of
Page 547 and 548:
Page 549 and 550:
Page 551 and 552:
Page 553 and 554:
Page 555 and 556:
Page 557 and 558:
Page 559 and 560:
Page 561 and 562:
Page 563 and 564:
Page 565 and 566:
Page 567 and 568:
Page 569 and 570:
Page 571 and 572:
Page 573 and 574:
Page 575 and 576:
Page 577 and 578:
Page 579 and 580:
Page 581 and 582:
Page 583 and 584:
Page 585 and 586:
Page 587 and 588:
Page 589 and 590:
Page 591 and 592:
Page 593 and 594:
578 TIME-RESOLVED PROTEIN FLUORESCE
Page 595 and 596:
Page 597 and 598:
Page 599 and 600:
Page 601 and 602:
Page 603 and 604:
Page 605 and 606:
Page 607 and 608:
Page 609 and 610:
Page 611 and 612:
Page 613 and 614:
Page 615 and 616:
Page 617 and 618:
Page 619 and 620:
Page 621 and 622:
Page 623 and 624:
608 MULTIPHOTON EXCITATION AND MICR
Page 625 and 626:
Page 627 and 628:
Page 629 and 630:
Page 631 and 632:
Page 633 and 634:
Page 635 and 636:
Page 637 and 638:
19 Fluorescence sensing of chemical
Page 639 and 640:
Page 641 and 642:
Page 643 and 644:
Page 645 and 646:
Page 647 and 648:
Page 649 and 650:
Page 651 and 652:
Page 653 and 654:
Page 655 and 656:
Page 657 and 658:
Page 659 and 660:
Page 661 and 662:
Page 663 and 664:
Page 665 and 666:
Page 667 and 668:
Page 669 and 670:
Page 671 and 672:
Page 673 and 674:
Page 675 and 676:
Page 677 and 678:
Page 679 and 680:
Page 681 and 682:
Page 683 and 684:
Page 685 and 686:
Page 687 and 688:
Page 689 and 690:
676 NOVEL FLUOROPHORES Figure 20.1.
Page 691 and 692:
678 NOVEL FLUOROPHORES Figure 20.7.
Page 693 and 694:
680 NOVEL FLUOROPHORES Figure 20.12
Page 695 and 696:
Page 697 and 698:
Page 699 and 700:
Page 701 and 702:
Page 703 and 704:
Page 705 and 706:
Page 707 and 708:
Page 709 and 710:
Page 711 and 712:
698 NOVEL FLUOROPHORES 33. Acherman
Page 713 and 714:
700 NOVEL FLUOROPHORES 103. Demas J
Page 715 and 716:
702 NOVEL FLUOROPHORES 176. Montalt
Page 717 and 718:
21 During the past 20 years there h
Page 719 and 720:
Page 721 and 722:
Page 723 and 724:
Page 725 and 726:
Page 727 and 728:
Page 729 and 730:
Page 731 and 732:
Page 733 and 734:
Page 735 and 736:
Page 737 and 738:
Page 739 and 740:
Page 741 and 742:
Page 743 and 744:
Page 745 and 746:
Page 747 and 748:
Page 749 and 750:
Page 751 and 752:
Page 753 and 754:
22 Fluorescence microscopy is one o
Page 755 and 756:
Page 757 and 758:
Page 759 and 760:
Page 761 and 762:
Page 763 and 764:
Page 765 and 766:
Page 767 and 768:
Page 769 and 770:
758 SINGLE-MOLECULE DETECTION Figur
Page 771 and 772:
Page 773 and 774:
Page 775 and 776:
Page 777 and 778:
766 SINGLE-MOLECULE DETECTION small
Page 779 and 780:
Page 781 and 782:
770 SINGLE-MOLECULE DETECTION Table
Page 783 and 784:
Page 785 and 786:
Page 787 and 788:
Page 789 and 790:
Page 791 and 792:
Page 793 and 794:
Page 795 and 796:
Page 797 and 798:
786 SINGLE-MOLECULE DETECTION face
Page 799 and 800:
788 SINGLE-MOLECULE DETECTION TCSPC
Page 801 and 802:
790 SINGLE-MOLECULE DETECTION 53. H
Page 803 and 804:
792 SINGLE-MOLECULE DETECTION Ke PC
Page 805 and 806:
794 SINGLE-MOLECULE DETECTION Polar
Page 807 and 808:
24 In the previous chapter we descr
Page 809 and 810:
Page 811 and 812:
Page 813 and 814:
Page 815 and 816:
Page 817 and 818:
Page 819 and 820:
Page 821 and 822:
Page 823 and 824:
Page 825 and 826:
Page 827 and 828:
Page 829 and 830:
Page 831 and 832:
Page 833 and 834:
Page 835 and 836:
Page 837 and 838:
Page 839 and 840:
Page 841 and 842:
Page 843 and 844:
Page 845 and 846:
Page 847 and 848:
Page 849 and 850:
Page 851 and 852:
25 In the preceding chapters we des
Page 853 and 854:
Page 855 and 856:
Page 857 and 858:
Page 859 and 860:
Page 861 and 862:
Page 863 and 864:
Page 865 and 866:
Page 867 and 868:
Page 869 and 870:
Page 871 and 872:
862 RADIATIVE-DECAY ENGINEERING: SU
Page 873 and 874:
Page 875 and 876:
Page 877 and 878:
Page 879 and 880:
Page 881 and 882:
Appendix I Corrected Emission Spect
Page 883 and 884:
Page 885 and 886:
Page 887 and 888:
Page 889 and 890:
Page 891 and 892:
Appendix II Fluorescence Lifetime S
Page 893 and 894:
Page 895 and 896:
Page 897 and 898:
890 APPENDIX III P ADDITIONAL READI
Page 899 and 900:
892 APPENDIX III P ADDITIONAL READI
Page 901 and 902:
894 ANSWERS TO PROBLEMS A1.4. A. Th
Page 903 and 904:
896 ANSWERS TO PROBLEMS Energy tran
Page 905 and 906:
898 ANSWERS TO PROBLEMS Figure 4.65
Page 907 and 908:
900 ANSWERS TO PROBLEMS expected to
Page 909 and 910:
Page 911 and 912:
904 ANSWERS TO PROBLEMS where f is
Page 913 and 914:
906 ANSWERS TO PROBLEMS [BSA] Obser
Page 915 and 916:
908 ANSWERS TO PROBLEMS emission. T
Page 917 and 918:
910 ANSWERS TO PROBLEMS dx rA A (
Page 919 and 920:
912 ANSWERS TO PROBLEMS B. A covale
Page 921 and 922:
914 ANSWERS TO PROBLEMS The α i va
Page 923 and 924:
Page 925 and 926:
Page 927 and 928:
920 ANSWERS TO PROBLEMS CHAPTER 24
Page 929 and 930:
Index A Absorption spectroscopy, 12
Page 931 and 932:
Page 933 and 934:
Page 935 and 936:
Page 937 and 938:
Page 939 and 940:
Page 941 and 942:
Page 943 and 944:
Page 945 and 946:
Page 947 and 948:
Page 949 and 950:
Page 951 and 952:
Page 953 and 954:
Page 955 and 956:
Page 957 and 958:
Page 959 and 960:
show all

Principles of Fluorescence Spectroscopy

Create successful ePaper yourself

Delete template?

Save as template?