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76 1 Amino Acids, Peptides, Proteins

Table 1.32. Enzymatic reactions affecting proteins

Hydrolysis

– Endopeptidases

– Exopeptidases

Proteolytic induced aggregation

– Collagen biosynthesis

– Blood coagulation

– Plastein reaction

Cross-linking

– Disulfide bonds

Protein disulfide isomerase

Protein disulfide reductase (NAD(P)H)

Protein disulfide reductase (glutathione)

Sulfhydryloxidase

Lipoxygenase

Peroxidase

– ε(γ-Glutamyl)lysine

– Transglutaminase

– Aldol-, aldimine condensation and subsequent

reactions (connective tissue)

Lysyloxidase

Phosphorylation, dephosphorylation

– Protein kinase

– Phosphoprotein phosphatase

Hydroxylation

– Proline hydroxylase

– Lysine hydroxylase

Glycosylation

– Glycoprotein-β-galactosyltransferase

Methylation and demethylation

– Protein(arginine)-methyl-transferase

– Protein(lysine)-methyl-transferase

– Protein-O-methyl-transferase

[2pt] Acetylation, deacetylation

– ε-N-Acetyl-lysine

endopeptidases varies greatly (cf. Table 1.34).

Trypsin exclusively cleaves linkages of amino

acid residues with a basic side chain (lysyl or

arginyl bonds) and chymotrypsin preferentially

cleaves bonds of amino acid residues which

have aromatic side chains (phenylalanyl, tyrosyl

or tryptophanyl bonds). Enzymes of microbial

origin often are less specific.

fruit tree, Carica papaya), bromelain (from the

sap and stem of pineapples, Ananas comosus),

ficin (from Ficus latex and other Ficus spp.) and

a Streptococcus proteinase. The range of activity

of these enzymes is very wide and, depending on

the substrate, is pH 4.5–10, with a maximum at

pH 6–7.5.

The mechanism of enzyme activity appears

to be similar to that of serine endopeptidases.

A cysteine residue is present in the active site.

A thioester is formed as a covalent intermediary

product. The enzymes are highly sensitive to

oxidizing agents. Therefore, as a rule they are

used in the presence of a reducing agent (e. g.,

cysteine) and a chelating agent (e. g., EDTA).

Inactivation of the enzymes is possible with oxidative

agents, metal ions or alkylating reagents

(cf. 1.2.4.3.5 and 1.4.4.5). In general these enzymes

are not very specific (cf. Table 1.34).

1.4.5.2.3 Metalo Peptidases

This group includes exopeptidases, carboxypeptidases

A and B, aminopeptidases, dipeptidases,

prolidase and prolinase, and endopeptidases

from bacteria and fungi, such as Bacillus

cereus, B. megaterium, B. subtilits, B. thermoproteolyticus

(thermolysin), Streptomyces

griseus (pronase; it also contains carboxy- and

aminopeptidases) and Aspergillus oryzae.

Most of these enzymes contain one mole of Zn 2+

per mole of protein, but prolidase and prolinase

contain one mole of Mn 2+ . The metal ion acts

as a Lewis acid in carboxypeptidase A, establishing

contact with the carbonyl group of the peptide

bond which is to be cleaved. Figure 1.41 shows

the arrangement of other participating residues

in the active site, as revealed by X-ray structural

analysis of the enzyme-substrate complex.

The enzymes are active in the pH 6–9 range; their

specificity is generally low (cf. Table 1.34).

Inhibition of these enzymes is achieved with

chelating agents (e. g. EDTA) or sodium dodecyl

sulfate.

1.4.5.2.2 Cysteine Endopeptidases

Typical representatives of this group of enzymes

are: papain (from the sap of a tropical, melonlike

1.4.5.2.4 Aspartic Endopeptidases

Typical representatives of this group are enzymes

of animal origin, such as pepsin and rennin

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