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42 1 Amino Acids, Peptides, Proteins

Fig. 1.10. Amino acid chromatogram. Separation of a mixture of amino acids (10 nmol/amino acid) by an amino

acid analyzer. Applied is a single ion exchange column: Durrum DC-4A, 295 × 4 mm buffers P 1 /P 2 /P 3 :0.2N

Na-citrate pH 3.20/0.2 N Na-citrate pH 4.25/1.2 N Na-citrate and NaCl of pH 6.45. Temperatures T 1 /T 2 /T 3 :

48/56/80 ◦ C. Flow rate: 25 ml/h; absorbance reading after color development with ninhydrin at 570/440 nm:

—/– –––

(cf. 1.2.4.3.5) to prevent reoxidation. Separation

of subunits is achieved by chromatographic or

electrophoretic methods.

1.4.1.2 Terminal Groups

N-terminal amino acids can be determined

by treating a protein with l-fluoro-2,4-

dinitrobenzene (Sanger’s reagent; cf. 1.2.4.2.2) or

5-dimethylaminonaphthalene-1-sulfonyl chloride

(dansyl chloride; cf. 1.2.4.2.1). Another possibility

is the reaction with cyanate, followed by

elimination of the N-terminal amino acid in the

form of hydantoin, and separation and recovery

of the amino acid by cleavage of the hydantoin

(cf. 1.2.4.2.3). The N-terminal amino acid (and

the amino acid sequence close to the N-terminal)

is accessible by hydrolysis with aminopeptidase,

in which case it should be remembered that

the hydrolysis rate is dependent on amino acid

side chains and that proline residues are not

cleaved. A special procedure is required when

the N-terminal residue is acylated (N-formyl- or

N-acetyl amino acids, or pyroglutamic acid).

Determination of C-terminal amino acids is

possible via the hydrazinolysis procedure

recommended by Akabori:

(1.83)

The C-terminal amino acid is then separated from

the amino acid hydrazides, e. g., by a cation exchange

resin, and identified. It is possible to mark

the C-terminal amino acid through selective titration

via oxazolinone:

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