Darwin's Dangerous Idea - Evolution and the Meaning of Life
Darwin's Dangerous Idea - Evolution and the Meaning of Life
Darwin's Dangerous Idea - Evolution and the Meaning of Life
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162 PRIMING DARWIN'S PUMP The Laws <strong>of</strong> <strong>the</strong> Game <strong>of</strong> <strong>Life</strong> 163<br />
<strong>and</strong> syn<strong>the</strong>sis, show that sequences rich in G <strong>and</strong> C are best at self-replication<br />
by template instruction without <strong>the</strong> help <strong>of</strong> enzymes" (Eigen 1992, p. 34).<br />
This is, you might say, a natural or physical spelling bias. In English, "e" <strong>and</strong><br />
"t" appear more frequently than, say, "u" or "j," but not because "e"s <strong>and</strong> "t"s<br />
are harder to erase, or easier to photocopy, or to write. (In fact, <strong>of</strong> course, <strong>the</strong><br />
explanation runs <strong>the</strong> o<strong>the</strong>r way around; we tend to use <strong>the</strong> easiest-to-read<strong>and</strong>-write<br />
symbols for <strong>the</strong> most frequently used letters; in Morse code, for<br />
example, "e" is assigned a single dot <strong>and</strong> "t" a single dash.) In RNA <strong>and</strong><br />
DNA, this explanation is reversed: G <strong>and</strong> C are favored because <strong>the</strong>y are <strong>the</strong><br />
most stable in replication, not because <strong>the</strong>y occur most frequently in genetic<br />
"words." This spelling bias is just "syntactic" at <strong>the</strong> outset, but it unites with<br />
a semantic bias:<br />
Examination <strong>of</strong> <strong>the</strong> genetic code [by <strong>the</strong> "philological methods"]... indicates<br />
that its first codons were rich in G <strong>and</strong> C. The sequences GGC <strong>and</strong><br />
GCC code respectively for <strong>the</strong> amino acids glycine <strong>and</strong> alanine, <strong>and</strong> because<br />
<strong>of</strong> <strong>the</strong>ir chemical simplicity <strong>the</strong>se were formed in greater abundance<br />
... [in <strong>the</strong> prebiotic world]. The assertion that <strong>the</strong> first code-words were<br />
assigned [emphasis added] to <strong>the</strong> most common amino acids is nothing if<br />
not plausible, <strong>and</strong> it underlines <strong>the</strong> fact that <strong>the</strong> logic <strong>of</strong> <strong>the</strong> coding scheme<br />
results from physical <strong>and</strong> chemical laws <strong>and</strong> <strong>the</strong>ir outworkings in Nature.<br />
[Eigen 1992, p. 34]<br />
These "outworkings" are algorithmic sorting processes, which take <strong>the</strong><br />
probabilities or biases that are due to fundamental laws <strong>of</strong> physics <strong>and</strong><br />
produce structures that would o<strong>the</strong>rwise be wildly improbable. As Eigen<br />
says, <strong>the</strong> resulting scheme has a logic; it is not just two things coming<br />
toge<strong>the</strong>r but an "assignment," a system that comes to make sense, <strong>and</strong> makes<br />
sense because—<strong>and</strong> only because—it works.<br />
These very first "semantic" links are <strong>of</strong> course so utterly simple <strong>and</strong> local<br />
that <strong>the</strong>y hardly count as semantic at all, but we can see a glimmer <strong>of</strong><br />
reference in <strong>the</strong>m never<strong>the</strong>less: <strong>the</strong>re is a fortuitous wedding <strong>of</strong> a bit <strong>of</strong><br />
nucleotide string with a protein fragment that helped directly or indirectly to<br />
reproduce it. The loop is closed; <strong>and</strong> once this "semantic" assignment system<br />
is in place, everything speeds up. Now a fragment <strong>of</strong> code-string can be <strong>the</strong><br />
code for something—a protein. This creates a new dimension <strong>of</strong> evaluation,<br />
because some proteins are better than o<strong>the</strong>rs at doing catalytic work, <strong>and</strong><br />
particularly at assisting in <strong>the</strong> replication process.<br />
This raises <strong>the</strong> stakes. Whereas at <strong>the</strong> outset, macro strings could differ<br />
only in <strong>the</strong>ir self-contained capacity to self-replicate, now <strong>the</strong>y can magnify<br />
<strong>the</strong>ir differences by creating—<strong>and</strong> linking <strong>the</strong>ir fates to—o<strong>the</strong>r, larger, structures.<br />
Once this feedback loop is created, an arms race ensues: longer <strong>and</strong><br />
longer macros compete for <strong>the</strong> available building blocks to build ever big-<br />
ger, faster, more effective—but also more expensive—self-replicating systems.<br />
Our pointless coin-tossing tournament <strong>of</strong> luck has transformed itself<br />
into a tournament <strong>of</strong> skill. It has a point, for <strong>the</strong>re is now something for <strong>the</strong><br />
succession <strong>of</strong> winners to be better at than just, trivially, winning <strong>the</strong> cointoss.<br />
And does <strong>the</strong> new tournament ever work! There are tremendous "skill"<br />
differences between proteins, so <strong>the</strong>re is plenty <strong>of</strong> room for improvement<br />
beyond <strong>the</strong> minuscule catalytic talents <strong>of</strong> <strong>the</strong> proteinoids. "In many cases,<br />
enzymic catalysis accelerates a reaction by a factor between one million <strong>and</strong><br />
one thous<strong>and</strong> million. Wherever such a mechanism has been analysed quantitatively,<br />
<strong>the</strong> result has been <strong>the</strong> same: enzymes are optimal catalysts"<br />
(Eigen 1992, p. 22). Catalytic work done creates new jobs to be done, so <strong>the</strong><br />
feedback cycles spread out to encompass more elaborate opportunities for<br />
improvement. "Whatever task a cell is adapted to, it carries out with optimal<br />
efficiency. The blue-green alga, a very early product <strong>of</strong> evolution, transforms<br />
light into chemical energy with an efficiency approaching perfection" (Eigen<br />
1992, p. 16). Such optimality cannot be happenstance; it must be <strong>the</strong> result <strong>of</strong><br />
a gradual homing-in process <strong>of</strong> improvement. So, from a set <strong>of</strong> tiny biases in<br />
<strong>the</strong> initial probabilities <strong>and</strong> competences <strong>of</strong> <strong>the</strong> building blocks, a process <strong>of</strong><br />
snowballing self-improvement is initiated.<br />
3. THE LAWS OF THE GAME OF LIFE<br />
This most beautiful system <strong>of</strong> <strong>the</strong> sun, planets, <strong>and</strong> comets, could only<br />
proceed from <strong>the</strong> counsel <strong>and</strong> dominion <strong>of</strong> an Intelligent <strong>and</strong> Powerful<br />
Being.<br />
—ISAAC NEWTON 1726 (passage translated in<br />
Ellegard 1956, p. 176)<br />
The more I examine die universe <strong>and</strong> study <strong>the</strong> details <strong>of</strong> its architecture,<br />
die more evidence I find diat die universe in some sense must have<br />
known diat we were coming.<br />
—FREEMAN DYSON 1979, p. 250<br />
It is easy to imagine a world that, though ordered, never<strong>the</strong>less does not<br />
possess <strong>the</strong> right sort <strong>of</strong> forces or conditions for <strong>the</strong> emergence <strong>of</strong><br />
significant depth.<br />
—PALI DAVIES 1992<br />
Fortunately for us, <strong>the</strong> laws <strong>of</strong> physics vouchsafe that <strong>the</strong>re are, in <strong>the</strong> Vast<br />
space <strong>of</strong> possible proteins, macromolecules <strong>of</strong> such breathtaking catalytic