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Contents - Max-Planck-Institut für Physik komplexer Systeme

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Collaborationsatthe mpipks WithprofessorFrankJülicherandhisgraduatestudentJöbinGharakhani,<br />

IamemployingthetheoryofphaseseparationinphysicstounderstandhowPgranulesareassembled<br />

uponthefertilizationoftheembryo.Specifically,werecentlyfoundthatbycombiningasimplemean-field<br />

free-energybasedmodelandtheclassicLifshitz-Slyozovdropletgrowthmodel,wearecapableofexplainingallofthesalientaspectsobservedintheproteinaggregationprocess.Witharangeofexperimental<br />

techniquesthatincludefluorescencecorrelationspectroscopy,confocalimagingandthree-dimensional<br />

particletracking,wearenowattemptingtoquantitativelyverifythemodel. Toachievethistask,a<br />

numberofoutstandingtheoreticalissueshavetobeaddressed. Forinstance,todescribethedynamics<br />

oftheaggregationphenomenon,onewillneedtogeneralizetheLifshitz-Slyozovmodelsubstantiallyto<br />

allowforsimultaneousdissolutionandcondensationeventsindifferentpartsofthecell.Thesechallenges<br />

areofinteresttophysicistsaswellasbiologists. Ourresearchisalsorelevanttootherself-assembled<br />

structuresobservedincellssuchasthePbodies,Cajalbodies,andstressgranules. Itisthereforeour<br />

ultimategoaltoestablishaquantitativetheorythatcanexplaincollectivelythesediverseintracellular<br />

assemblyprocesses.<br />

Besidesmymainfocusonproteinaggregationphenomena,Iamalsointerestedinapplyingfarfrom<br />

equilibriumtechniquesinphysicstostudybiologicalsystems.Thisapproachisimportantbecausemost<br />

biologicalprocesseshappeninthefarfromequilibriumregime.Variousmethodsareavailabletoinvestigatethesenonequilibriumprocesses.Forinstance,Kramersescapetheoryissuitablefortheanalysisof<br />

therateofacertainrareeventinafluctuatingsystem.Usingthistheory,Ihaveinvestigatedtherateof<br />

uncontrolledcellproliferationinrelationtoskincancer[1].AnotherapproachtostudynonequilibriumsystemsiswiththeuseoftheFokker-<strong>Planck</strong>equation.Basedonthisformalism,Ihaveemployedbothnaive<br />

[2]andrenormalizationgroupimproved[5]perturbativemethodstostudythephenomenonofcollective<br />

motioninself-propelledparticles. Furthermore,withDr. FernandoPeruani,Ihaverecentlyinitiateda<br />

studyofcollectivemotioninself-propelledparticlesonalatticefromafield-theoreticperspective.<br />

Externalcollaborations FortheprojectontheinvestigationofPgranulesformation,myexternal<br />

collaboratorsinclude<br />

• TheHymangroupatthe<strong>Max</strong><strong>Planck</strong><strong>Institut</strong>eofMolecularCellBiologyandGenetics.<br />

• ProfessorCliffordBrangwynneattheDepartmentofChemicalandBiologicalEngineering,PrincetonUniversity.<br />

• Dr.ZdenekPetráˇsekattheBiotechnologyCenter(BIOTEC)oftheTechnischeUniversitätDresden.<br />

Fortheproteinamyloidproject,IamcollaboratingwiththeVauxgroupattheDunnSchoolofPathology,<br />

UniversityofOxford.<br />

Externalpresentations<br />

Invitedtalks:<br />

• C.F.Lee. “Thephysicsofproteinamyloidformation.” DepartmentofPhysicsandAstronomy,<br />

UniversityofEdinburgh,August2010.<br />

• C.F.Lee.“Proteinaggregationphenomena.”DepartmentofPhysiology,McGillUniversity,November2010.<br />

Contributedtalks:<br />

• C.F.Lee. “Proteinamyloidself-assembly.” Pierre-GillesdeGennesWinterSchool2010–FEBS<br />

AdvancedLectureCourseonCytoskeleton,ContractilityandMotility,February2010<br />

• C.F.Lee.“Proteinamyloidformation:atheoreticalphysicistsview.”DPGSpringMeeting,March<br />

2010<br />

• C.F.Lee,C.P.Brangwynne,Z.Petráˇsek,J.Gharakhani,A.A.Hyman,andF.Jülicher. “Spatial<br />

organizationofthecellcytoplasm: Proteingradientsandliquid-liquidphaseseparationintheC.<br />

elegansembryo.”DPGSpringmeeting,March2011.<br />

PKS-Fellowship 105

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