Contents - Max-Planck-Institut für Physik komplexer Systeme
Contents - Max-Planck-Institut für Physik komplexer Systeme
Contents - Max-Planck-Institut für Physik komplexer Systeme
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Collaborationsatthe mpipks WithprofessorFrankJülicherandhisgraduatestudentJöbinGharakhani,<br />
IamemployingthetheoryofphaseseparationinphysicstounderstandhowPgranulesareassembled<br />
uponthefertilizationoftheembryo.Specifically,werecentlyfoundthatbycombiningasimplemean-field<br />
free-energybasedmodelandtheclassicLifshitz-Slyozovdropletgrowthmodel,wearecapableofexplainingallofthesalientaspectsobservedintheproteinaggregationprocess.Witharangeofexperimental<br />
techniquesthatincludefluorescencecorrelationspectroscopy,confocalimagingandthree-dimensional<br />
particletracking,wearenowattemptingtoquantitativelyverifythemodel. Toachievethistask,a<br />
numberofoutstandingtheoreticalissueshavetobeaddressed. Forinstance,todescribethedynamics<br />
oftheaggregationphenomenon,onewillneedtogeneralizetheLifshitz-Slyozovmodelsubstantiallyto<br />
allowforsimultaneousdissolutionandcondensationeventsindifferentpartsofthecell.Thesechallenges<br />
areofinteresttophysicistsaswellasbiologists. Ourresearchisalsorelevanttootherself-assembled<br />
structuresobservedincellssuchasthePbodies,Cajalbodies,andstressgranules. Itisthereforeour<br />
ultimategoaltoestablishaquantitativetheorythatcanexplaincollectivelythesediverseintracellular<br />
assemblyprocesses.<br />
Besidesmymainfocusonproteinaggregationphenomena,Iamalsointerestedinapplyingfarfrom<br />
equilibriumtechniquesinphysicstostudybiologicalsystems.Thisapproachisimportantbecausemost<br />
biologicalprocesseshappeninthefarfromequilibriumregime.Variousmethodsareavailabletoinvestigatethesenonequilibriumprocesses.Forinstance,Kramersescapetheoryissuitablefortheanalysisof<br />
therateofacertainrareeventinafluctuatingsystem.Usingthistheory,Ihaveinvestigatedtherateof<br />
uncontrolledcellproliferationinrelationtoskincancer[1].AnotherapproachtostudynonequilibriumsystemsiswiththeuseoftheFokker-<strong>Planck</strong>equation.Basedonthisformalism,Ihaveemployedbothnaive<br />
[2]andrenormalizationgroupimproved[5]perturbativemethodstostudythephenomenonofcollective<br />
motioninself-propelledparticles. Furthermore,withDr. FernandoPeruani,Ihaverecentlyinitiateda<br />
studyofcollectivemotioninself-propelledparticlesonalatticefromafield-theoreticperspective.<br />
Externalcollaborations FortheprojectontheinvestigationofPgranulesformation,myexternal<br />
collaboratorsinclude<br />
• TheHymangroupatthe<strong>Max</strong><strong>Planck</strong><strong>Institut</strong>eofMolecularCellBiologyandGenetics.<br />
• ProfessorCliffordBrangwynneattheDepartmentofChemicalandBiologicalEngineering,PrincetonUniversity.<br />
• Dr.ZdenekPetráˇsekattheBiotechnologyCenter(BIOTEC)oftheTechnischeUniversitätDresden.<br />
Fortheproteinamyloidproject,IamcollaboratingwiththeVauxgroupattheDunnSchoolofPathology,<br />
UniversityofOxford.<br />
Externalpresentations<br />
Invitedtalks:<br />
• C.F.Lee. “Thephysicsofproteinamyloidformation.” DepartmentofPhysicsandAstronomy,<br />
UniversityofEdinburgh,August2010.<br />
• C.F.Lee.“Proteinaggregationphenomena.”DepartmentofPhysiology,McGillUniversity,November2010.<br />
Contributedtalks:<br />
• C.F.Lee. “Proteinamyloidself-assembly.” Pierre-GillesdeGennesWinterSchool2010–FEBS<br />
AdvancedLectureCourseonCytoskeleton,ContractilityandMotility,February2010<br />
• C.F.Lee.“Proteinamyloidformation:atheoreticalphysicistsview.”DPGSpringMeeting,March<br />
2010<br />
• C.F.Lee,C.P.Brangwynne,Z.Petráˇsek,J.Gharakhani,A.A.Hyman,andF.Jülicher. “Spatial<br />
organizationofthecellcytoplasm: Proteingradientsandliquid-liquidphaseseparationintheC.<br />
elegansembryo.”DPGSpringmeeting,March2011.<br />
PKS-Fellowship 105