Chapter 7 – Marker-<strong>assisted</strong> <strong>selection</strong> <strong>in</strong> common beans and cassava 113Kawano, K. 2003. Thirty years of cassava breed<strong>in</strong>g for productivity- biological and social factors forsuccess. Crop Sci. 43: 1325–1335.Kawano K., Nar<strong>in</strong>taraporn, K., Nar<strong>in</strong>taraporn, P., Sarakarn, S., Limsila, A., Limsila, J., Suparhan,D., Sarawat, V. & Watananonta, W. 1998. Yield improvement <strong>in</strong> a multistage breed<strong>in</strong>g programfor cassava. Crop Sci. 38: 325–332.Kelly, J.D. & Adams, M.W. 1987. Phenotypic recurrent <strong>selection</strong> <strong>in</strong> ideotype breed<strong>in</strong>g of p<strong>in</strong>to beans.Euphytica 36: 69–80.Kelly, J.D., Schneider, K.A. & Kolkman, J.M. 1999. Breed<strong>in</strong>g to improve yield. In S.P. S<strong>in</strong>gh, ed.Common bean improvement <strong>in</strong> the twenty-first century. Developments <strong>in</strong> plant breed<strong>in</strong>g, Vol. 7,pp. 185–222. Dordrecht, Netherlands, Kluwer Academic Publishers.Kelly, J.D, Gepts, P., Miklas, P.N. & Coyne, D.P. 2003. Tagg<strong>in</strong>g and mapp<strong>in</strong>g of genes and QTL andmolecular-<strong>marker</strong> <strong>assisted</strong> <strong>selection</strong> for traits of economic importance <strong>in</strong> bean and cowpea. FieldCrops Res. 82: 135–154.Klimyuk, V.I., Carroll, B.J., Thomas, C.M. & Jones, J.D.G. 1993. Alkali treatment for rapid preparationof plant material for reliable PCR analysis. Plant J. 3: 493–494.Kullaya, A., Mtunda, K., Kulembeka, H., Ferguson, M., Mar<strong>in</strong>, J., Osp<strong>in</strong>a, C., Barrera, E., Jarvis,A., Morante, M., Ceballos, H., Tohme, J. & Fregene, M. 2004. Molecular <strong>marker</strong>-<strong>assisted</strong> andfarmer participatory improvement of cassava germplasm for farmer/market preferred traits <strong>in</strong>Tanzania. 6 th. Internat. Scientific Mtg. Cassava Biotech. Network. Cali, Colombia, CIAT.Legg, J.P. & Ogwal, S. 1998. Changes <strong>in</strong> the <strong>in</strong>cidence of African cassava mosaic virus disease andthe abundance of its whitefly vector along south-north transects <strong>in</strong> Uganda. J. Appl. Entom. 122:169–178.Liao, H., Yan, X., Rubio, G., Beebe, S.E., Blair, M.W. & Lynch, J.P. 2004. Basal root gravitropismand phosphorus acquisition efficiency <strong>in</strong> common bean. Funct. Plant Biol. 31: 1–12.Mahuku, G., Montoya, C., Henríquez, M.A., Jara, C., Terán, H. & Beebe, S. 2004. Inheritance andcharacterization of angular leaf spot resistance gene <strong>in</strong> common bean accession G 10474 and identificationof an AFLP <strong>marker</strong> l<strong>in</strong>ked to the resistance gene. Crop Sci. 44: 1817–1824.Mba, R.E.C., Stephenson, P., Edwards, K., Melzer, S., Nkumbira, J., Gullberg, U., Apel, K., Gale,M., Tohme, J. & Fregene, M. 2001. Simple sequence repeat (SSR) <strong>marker</strong>s survey of the cassava(Manihot esculenta Crantz) genome: towards a SSR-based molecular genetic map of cassava.Theor. Appl. Genet. 102: 21–31.Melotto, M., Afanador, L. & Kelly, J.D. 1996. Development of a SCAR <strong>marker</strong> l<strong>in</strong>ked to the I gene<strong>in</strong> common bean. Genome 39: 1216–1219.Meuwissen, T.H.E., Hayes, B.J. & Goddard, M.E. 2001. Prediction of total genetic value us<strong>in</strong>ggenome-wide dense <strong>marker</strong> maps. Genetics 157: 1819–1829.Miklas, P.N., Larsen, R.C., Riley, R. & Kelly, J.D. 2000a. Potential <strong>marker</strong>-<strong>assisted</strong> <strong>selection</strong> forbc-1 2 resistance to bean common mosaic potyvirus <strong>in</strong> common bean. Euphytica 116(3):211–219.Miklas, P.N., Smith, J.R., Riley, R., Grafton, K.F., S<strong>in</strong>gh, S.P., Jung, G. & Coyne, D.P. 2000b.Marker-<strong>assisted</strong> breed<strong>in</strong>g for pyramided resistance to common bacterial blight <strong>in</strong> common bean.Ann. Rep. Bean Improv. Coop. 43: 39–40.Miklas, P.N., Stone, V., Daly, M.J., Stavely, J.R., Steadman, J.R., Bassett, M.J., Delorme, R. &Beaver, J.S. 2000c. Bacterial, fungal, and viral disease resistance loci mapped <strong>in</strong> a recomb<strong>in</strong>ant<strong>in</strong>bred common bean population (‘Dorado’/XAN 176). J. Am. Soc. Hort. Sci. 125: 476–481.
114Marker-<strong>assisted</strong> <strong>selection</strong> – Current status and future perspectives <strong>in</strong> crops, livestock, forestry and fishMiklas, P.N., Kelly, J.D., Beebe, S.E. & Blair, M.W. 2006. Common bean breed<strong>in</strong>g for resistanceaga<strong>in</strong>st biotic and abiotic stresses: from classical to MAS breed<strong>in</strong>g. Euphytica 147: 105–131.Muñoz, L.C., Blair, M.W., Duque, M.C., Roca, W. & Tohme, J. 2004. Level of <strong>in</strong>trogression <strong>in</strong> <strong>in</strong>terspecific(Phaseolus vulgaris x P. acutifolius) congruity-backcross l<strong>in</strong>es. Crop Sci. 44: 637–645.Nichols, R.F.W. 1947. Breed<strong>in</strong>g cassava for virus resistance. East Afr. Agric. J. 12: 184–194.Nietsche, S., Borém, A., Carvalho, G.A., Rocha, C., Paula, T.J., de Barros, E.G. & Moreira, M.A.2000. RAPD and SCAR <strong>marker</strong>s l<strong>in</strong>ked to a gene coferr<strong>in</strong>g resistance to angular leaf spot <strong>in</strong>common bean. J. Phytopathol. 148: 117–121.Nobuyuki, I., Bautista, N.S., Yamada, T., Kamijima, O. & Ishi, T. 2000. Ultra simple DNA extractionmethod for <strong>marker</strong>-<strong>assisted</strong> <strong>selection</strong> us<strong>in</strong>g microsatellite <strong>marker</strong>s <strong>in</strong> rice. Plant Mol. Biol.Reporter 18: 1–6.Okogben<strong>in</strong>, E., Porto, M.C.M & Dixon, A.G.O. 1998. Influence of plant<strong>in</strong>g season on <strong>in</strong>cidence andseverity of African cassava mosaic disease <strong>in</strong> the subhumic zone of Nigeria. In I.J. Ekanayake, ed.Root crops and poverty alleviation, pp. 338–392. Ibadan, Nigeria, IITA.Park, S.O., Coyne, D.P., Mutlu, N., Jung, G. & Steadman, L.R. 1999. Confirmation of molecular<strong>marker</strong>s and flower color associated with QTL for resistance to common bacterial blight <strong>in</strong>common beans. J. Amer. Soc. Hort. Sci. 124: 519–526.Pastor-Corrales M.A., Jara, C. & S<strong>in</strong>gh, S. 1998. Pathogenic variation <strong>in</strong>, source of, and breed<strong>in</strong>gfor resistance to Phaeoisariopsis griseola caus<strong>in</strong>g angular leaf spot <strong>in</strong> common bean. Euphytica 103:161–171.Pérez, J.C., Ceballos, H., Jaramillo, G., Morante, N., Calle, F., Arias, B. & Bellotti, A.C. 2005a.Epistasis <strong>in</strong> cassava (Manihot esculenta Crantz) adapted to mid-altitude valley environment. CropSci. 45: 1491–1496.Pérez, J.C., Ceballos, H., Calle, F., Morante, N., Gaitán, W., Llano, G. & Alvarez, E. 2005b.With<strong>in</strong>-family genetic variation and epistasis <strong>in</strong> cassava (Manihot esculenta Crantz) adapted to theacid-soils environment. Euphytica 145: 77–85.Polston, J.E. & Anderson, P.K. 1997. The emergence of whitefly transmitted gem<strong>in</strong>iviruses <strong>in</strong> tomato<strong>in</strong> the western hemisphere. Plant Disease 81: 1357–1369.Rajendran, P.G., Rav<strong>in</strong>dran, C.S., Nair, S.G. & Nayar, T.V.R. 2000. True cassava seeds (TCS) forrapid spread of the crop <strong>in</strong> non-traditional areas. Thiruvananthapuram, Kerala, India, CentralTuber Crops Research Institute. 22 pp.Santana, G.E., Blair, M.W., Morales, F., Mahuku, G., Jara, C. & Castaño, M. 2004. Uso de tecnicasclasicas y avanzadas para identificar genotipos de frijol resistentes a antracnosis y mosaico común.Fitotecnia Colombiana 4: 44–54.Sartorato, A., Nietsche, S., Barros, E.G. & Moreira, M.A. 1999. SCAR <strong>marker</strong> l<strong>in</strong>ked to angular leafspot resistance gene <strong>in</strong> common bean. Bean Improv. Coop. 42: 23–24.Schneider, K.A., Brothers, M.E. & Kelly, J.D. 1997. Marker-<strong>assisted</strong> <strong>selection</strong> to improve droughttolerance <strong>in</strong> common bean. Crop Sci. 37: 51–60.Scotti, C., Pupilli, F., Salvi, S. & Arcioni, S. 2000. Variation <strong>in</strong> Vigot and <strong>in</strong> RFLP-estimated heterozygosityby self<strong>in</strong>g tetraploid alfalfa: new perspectives for the use of self<strong>in</strong>g <strong>in</strong> alfalfa breed<strong>in</strong>g.Theor. Appl. Genet. 101: 120–125.Shull, G.F. 1952. Beg<strong>in</strong>n<strong>in</strong>gs of the heterosis concept. In J.W. Gowen, ed. Heterosis, pp. 14–48. Ames,IA, USA, Iowa State College Press.
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iiiContentsAcknowledgementsForeword
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Section v - marker-assisted selecti
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viiForewordSince almost the beginni
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ixAbbreviations and acronymsAATFAB-
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xiFIVIMSFNPFSCFSILGABIGASGCAGCPGDPG
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xiiiOBMOECDOIEOPVPAGEPBRsPCRPGRFAPI
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xvContributorsAmalia BaroneProfesso
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xviiElcio Perpétuo GuimarãesSenio
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xixAndrea SonninoSenior Agricultura
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Chapter 1Marker-assisted selection
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This book provides a comprehensive