marker-assisted selection in wheat - ictsd

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Chapter 16 – Possibilities for marker-assisted selection in aquaculture breeding schemes 325McConnell, S.K.J., Beynon, C., Leamon, J. & Skibinski, D.O.F. 2000. Microsatellite marker-basedgenetic linkage maps of Oreochromis aureus and O. niloticus (Cichlidae): extensive linkage groupsegment homologies revealed. Anim. Genet. 31: 214–216.McDonald, G.J., Danzmann, R.G. & Ferguson, M.M. 2004. Relatedness determination in theabsence of pedigree information in three cultured strains of rainbow trout (Oncorhynchus mykiss).Aquaculture 233: 65–78.Meuwissen, T.H.E. 1997. Maximizing the response of selection with a predefined rate of inbreeding.J. Anim. Sci. 75: 934–940.Meuwissen, T.H.E. & Sonesson, A.K. 1998. Maximizing the response of selection with a predefinedrate of inbreeding – overlapping generations. J. Anim. Sci. 76: 2575–2583.Meuwissen, T.H.E. & Sonesson, A.K. 2004. Genotype-assisted optimum contribution selection tomaximise selection response over a specified time period. Genet. Res. 84: 109–116.Meuwissen, T.H.E., Karlsen, A., Lien, S., Olsaker, I. & Goddard, M.E. 2002. Fine mapping of aquantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping.Genetics 161: 373–379.Moen, T., Hoyheim, B., Munck, H. & Gomez-Raya, L. 2004a. A linkage map of Atlantic salmon(Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes.Anim. Genet. 35: 81–92.Moen, T., Agresti, J.J., Cnaani, A., Moses, H., Famula, T.R., Hulata, G., Gall, G.A.E. & May, B.2004b. A genome scan of a four-way tilapia cross supports the existence of a quantitative trait locusfor cold tolerance on linkage group 23. Aquaculture 35: 893–904.Moen, T., Fjalestad, K.T., Munck, H. & Gomez-Raya, L. 2004c. A multistage testing strategy fordetection of quantitative trait loci affecting disease resistance in Atlantic salmon. Genetics 167:851–858.Moen, T., Hayes, B., Sonesson, A.K., Lien, S., Høyheim, B., Munck, H. & Meuwissen, T.H.E. 2006.Mapping of a quantitative trait loci for resistance against infectious salmon anemia in Atlanticsalmon (Salmo salar): comparing survival models with binary models. Genetics. Submitted.Moore, S.S., Whan, V., Davis, G.P., Byrne, K., Hetzel, D.J.S. & Preston, N. 1999. The developmentand application of genetic markers for the kuruma prawn (Penaeus japonicus). Aquaculture 173:19–32.Nakamura, K., Ozaki, A., Akutsu, T., Iwai., K., Sakamoto, T., Toshizaki, G. & Okamoto, N. 2001.Genetic mapping of the dominant albino locus in rainbow trout (Oncorhynchus mykiss). Mol.Genet. Genom. 265: 687–93.Nichols, K.M., Bartholomew, J. & Thorgaard, G.H. 2003. Mapping multiple genetic loci associatedwith Ceratomyxa shasta resistance in Oncorhynchus mykiss. Dis. Aquat. Org. 56: 145–154.Nichols, K.M., Wheeler, P.A. & Thorgaard, G.H. 2004. Quantitative trait loci analyses for meristictraits in Oncorhynchus mykiss. Env. Biol. Fish. 69: 317–331.Nichols, K.M., Robison, B.D., Wheeler, P.A. & Thorgaard, G.H. 2000. Quantitative trait loci (QTL)associated with developmental rate in clonal Oncorhynchus mykiss strains. Aquaculture 209:233.Nichols, K.M., Young, W.P., Danzmann, R.G., Robison, B.D., Rexroad, C., Noakes, M., Phillips,R.B., Bentzen, P., Spies, I., Knudsen, K., Allendorf, F.W., Cunningham, B.M., Brunelli, J.,Zhang, H., Ristow, S., Drew, R., Brown, K.H., Wheeler, P.A. & Thorgaard, G.H. 2003. A consolidatedlinkage map for rainbow trout (Oncorhynchus mykiss). Anim. Genet. 34: 102–115.Norris, A.T., Bradley, D.G. & Cunningham, E.P. 2000. Parentage and relatedness determination infarmed Atlantic salmon (Salmo salar) using microsatellite markers. Aquaculture 182: 73–83.
326Marker-assisted selection – Current status and future perspectives in crops, livestock, forestry and fishO’Malley, K.G., Sakamoto, T., Danzmann, R.G. & Ferguson, M.M. 2003. Quantitative trait loci forspawning date and body weight in rainbow trout: testing for conserved effects across ancestrallyduplicated chromosomes. J. Hered. 94: 273–84.Ozaki, A., Sakamoto, T., Khoo, S., Nakamura, K., Coimbra, M.R.M., Akutsu, T. & Okamoto,N. 2001. Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreaticnecrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Genom. 265:23–31.Palti, Y., Shirak, A., Cnaani, A., Hulata, G., Avtalion, R.R. & Ron, M. 2002. Detection of genes withdeleterious alleles in an inbred line of tilapia (Oreochromis aureus). Aquaculture 206: 151–164.Pante, M.J.R., Gjerde, B., McMillan, I. & Misztal, I. 2002. Estimation of additive and dominancegenetic variances for body weight at harvest in rainbow trout, Oncorhynchus mykiss. Aquaculture204: 383–392.Parsons, J.E. & Thorgaard, G.H. 1984. Induced androgenesis in rainbow trout. J. Exp. Zool. 231:407–412.Pérez, F., Erazo, C., Zhinaula, M., Volckaert, F. & Calderon, J. 2004. A sex-specific linkage map of thewhite shrimp Penaeus (Litopenaeus) vannamei based on AFLP markers. Aquaculture 242: 105–118.Perez-Enriquez, R., Takagi, M. & Taniguchi, N. 1999. Genetic variability and pedigree tracing of ahatchery-reared stock of red sea bream (Pagrus major) used for stock enhancement, based on microsatelliteDNA markers. Aquaculture 173: 413–423.Perry, G.M., Ferguson, M.M. & Danzmann, R.G. 2003. Effects of genetic sex and genomic backgroundon epistasis in rainbow trout (Oncorhynchus mykiss). Genetica 119: 35–50.Perry, G.M., Danzmann, R.G., Ferguson, M.M. & Gibson, J.P. 2001. Quantitative trait loci forupper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss). Heredity 86:333–341.Poompuang, S. & Hallerman, E.M. 1997. Toward detection of quantitative trait loci and markerassistedselection in fish. Rev. Fisheries Sci. 5: 253–277.Reid, D.P., Szanto, A., Glebe, B., Danzmann, R.G. & Ferguson, M.M. 2005. QTL for body weightand condition factor in Atlantic salmon (Salmo salar): comparative analysis with rainbow trout(Oncorhynchus mykiss) and Arctic charr (Salvelinus alpinus). Heredity 94: 166–172.Robison, B.D., Wheeler, P.A., Sundin, K., Sikka, P. & Thorgaard, G.H. 2001. Composite intervalmapping reveals a major locus influencing embryonic development rate in rainbow trout(Oncorhynchus mykiss). J. Hered. 92: 16–22.Rodriguez, M.F., LaPatra, S., Williams, S., Famula, T. & May, B. 2005. Genetic markers associatedwith resistance to infectious hematopoietic necrosis in rainbow and steelhead trout (Oncorhynchusmykiss) backcrosses. Aquaculture 241: 93–115.Rye, M. & Mao, I.L. 1998. Nonadditive genetic effects and inbreeding depression for body weight inAtlantic salmon (Salmo salar). Livest. Prodn. Sci. 57: 15–22.Sakamoto, T., Danzmann, R.G., Okamoto, N., Ferguson, M.M. & Ihssen, P.E. 1999. Linkageanalysis of quantitative trait loci associated with spawning time in rainbow trout (Oncorhynchusmykiss). Aquaculture 173: 33–43.Sakamoto, T., Danzmann, R.G., Gharbi, K., Howard, P., Ozaki, A., Khoo, S.K., Woram, R.A.,Okamoto, N., Ferguson, M.M., Holm, L.-E., Guyomard, R. & Hoyheim, B. 2000. A microsatellitelinkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specificdifferences in recombination rates. Genetics 155: 1331–1345.
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iiiContentsAcknowledgementsForeword
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Section v - marker-assisted selecti
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viiForewordSince almost the beginni
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ixAbbreviations and acronymsAATFAB-
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xiFIVIMSFNPFSCFSILGABIGASGCAGCPGDPG
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xiiiOBMOECDOIEOPVPAGEPBRsPCRPGRFAPI
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xvContributorsAmalia BaroneProfesso
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xviiElcio Perpétuo GuimarãesSenio
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xixAndrea SonninoSenior Agricultura
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Chapter 1Marker-assisted selection
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Chapter 1 - An overview of the issu
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16Marker-assisted selection - Curre
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Chapter 3Molecular markers for use
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Chapter 3 - Molecular markers for u
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Chapter 6Targeted introgression of
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Chapter 6 - Targeted introgression
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Chapter 10Strategies, limitations a
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Chapter 19Technical, economic and p
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Chapter 20Impacts of intellectual p
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