Chapter 15 – Marker-<strong>assisted</strong> <strong>selection</strong> <strong>in</strong> forestry species 297Butcher, P.A. & Moran, G.F. 2000. Genetic l<strong>in</strong>kage mapp<strong>in</strong>g <strong>in</strong> Acacia mangium 2. Development ofan <strong>in</strong>tegrated map from two outbred pedigrees us<strong>in</strong>g RFLP and microsatellite loci. Theor. Appl.Genet. 101: 594–605.Butcher, P.A., Moran, G.F. & DeCroocq, S. 1998. Use of molecular <strong>marker</strong>s <strong>in</strong> domestication andbreed<strong>in</strong>g programs for acacias. In J.W.Turnbull, H.R. Crompton, & K. P<strong>in</strong>yopusarek, eds. Recentdevelopments <strong>in</strong> acacia plant<strong>in</strong>g, pp. 211–215. ACIAR Proc. No. 82, Canberra. ACIAR.Byrne, M., Murrell, J.C., Allen, B. & Moran, G.F. 1995. An <strong>in</strong>tegrated genetic l<strong>in</strong>kage map for eucalyptsus<strong>in</strong>g RFLP, RAPD and isozyme <strong>marker</strong>s. Theor. Appl. Genet. 91: 869–875.Byrne, M., Murrell, J.C., Owen, J.V., Kriedemann, P., Williams, E.R. & Moran, G.F. 1997a.Identification and mode of action of quantitative trait loci affect<strong>in</strong>g seedl<strong>in</strong>g height and leaf area <strong>in</strong>Eucalyptus nitens. Theor. Appl. Genet. 94: 674–681.Byrne, M., Murrell, J.C., Owen, J.V., Williams, E.R. & Moran, G.F. 1997b Mapp<strong>in</strong>g of quantitativetrait loci <strong>in</strong>fluenc<strong>in</strong>g frost tolerance <strong>in</strong> Eucalyptus nitens. Theor. Appl. Genet. 95: 975–979.Carson, M., Walter, C. & Carson, S. 2004. The future of forest biotechnology. In R. Kellison, S.McCord, & K.M.A Gartland, eds. Forest biotechnology <strong>in</strong> Lat<strong>in</strong> America, pp. 13–38. Proceed<strong>in</strong>gs,Workshop Biotecnolegia Forestal, Biotechnology Forum, Conceptión, Chile (available at www.forestbiotech.org/pdffiles/ChlePDFf<strong>in</strong>al31Jan2005.pdf).Cervera, M.T., Sewell, M.M., Rampant, P.-F., Storme, V. & Boejan, W. 2004. Genome mapp<strong>in</strong>g <strong>in</strong>Populus. In S. Kumar, & M. Fladung, eds. Molecular genetics and breed<strong>in</strong>g of forest trees, pp. 387–410. New York, USA, Haworth Press.Cervera, M.T., Stormel, V., Ivens, B., Gusmão, J., Liu, B.H., Hostyn, V., Van Slyckenc, J., VanMontagu, M. & Boerjan, W. 2001. Dense genetic l<strong>in</strong>kage maps of three Populus species (Populusdeltoides, P. nigra and P. trichocarpa based on AFLP and microsatellite <strong>marker</strong>s. Genetics 158:787–809.Chagne, D., Lalanne, C., Madur, D., Kumar, S., Frigerio, J.-M., Krier, C., Decroocq, S., Savoure,Al, Bou-Dagher-Karrat, M., Bertocchi, E., Brach, J. & Plomion, C. 2002. A high density l<strong>in</strong>kagemap for maritime p<strong>in</strong>e based on AFLPs. Ann. For. Sci. 59: 627–636.Chaix, G., Gerber, S., Razafimaharo, V., Vigneron, P., Verhaegen, D. & Hamon, S. 2003. Gene flowestimation <strong>in</strong> a Malagasy seed orchard of Eucalyptus grandis. Theor. Appl. Genet. 107: 705–712.Chaix, G. & Monteuuis, O. 2004. Biotechnology <strong>in</strong> the forestry sector. In Prelim<strong>in</strong>ary review ofbiotechnology <strong>in</strong> forestry <strong>in</strong>clud<strong>in</strong>g genetic modification. FAO Forest Genetic Resources Work<strong>in</strong>gPaper FGR/59E. Rome (available at www.fao.org/docrep/008/ae574e/ae574e00.htm).Costa, P., Pot, D., Dubos, C., Frigerio, J.M., Pionneau, C., Bodenes, C., Bertocchi, E., Cervera, M.-T., Rem<strong>in</strong>gton, D.L. & Plomion, C. 2000. A genetic map of Maritime p<strong>in</strong>e based on AFLP, RAPDand prote<strong>in</strong> <strong>marker</strong>s. Theor. Appl. Genet. 100: 39–48.Devey, M.E., Fiddler, T.A, Liu, B.-H., Knapp, J. & Neale, D.B. 1994. An RFLP l<strong>in</strong>kage map forloblolly p<strong>in</strong>e based on a three-generation pedigree. Theor. Appl. Genet. 88: 273–278.Devey, M.E., Bell, J.C., Smith, D.N., Neale, D.B. & Moran, G.F. 1996. A genetic l<strong>in</strong>kage mapfor P<strong>in</strong>us radiata based on RFLP, RAPD and microsatellite <strong>marker</strong>s. Theor. Appl. Genet. 92:673–679.Devey, M.E., Sewell, M.M., Uren, T.L. & Neale, D. 1999. Comparative mapp<strong>in</strong>g <strong>in</strong> loblolly andradiata p<strong>in</strong>e us<strong>in</strong>g RFLP and microsatellite <strong>marker</strong>s. Theor. Appl. Genet. 99: 656–662.
298Marker-<strong>assisted</strong> <strong>selection</strong> – Current status and future perspectives <strong>in</strong> crops, livestock, forestry and fishDevey, M.E., Carson, S.D., Nolan, M.F., Matheson, A.C., Te Ri<strong>in</strong>i, C. & Hohepa, J. 2004a. QTLassociation for density and diameter <strong>in</strong> P<strong>in</strong>us radiata and the potential for <strong>marker</strong>-aided <strong>selection</strong>.Theor. Appl. Genet. 108: 516–524.Devey, M.E., Groom, K.A., Nolan, M.F., Bell, J.C., Dudz<strong>in</strong>ski, M.J., Old, K.M., Matheson,A.C. & Moran, G.F. 2004b. Detection and verification of quantitative trait loci for resistance toDothistroma needle blight <strong>in</strong> P<strong>in</strong>us radiata. Theor. Appl. Genet. 108: 1056–1063.Djerbi, S., L<strong>in</strong>dskog, M., Arvestad, L., Sterky, F. & Teeri, T.T. 2005. The genome sequence of blackcottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes. Planta221: 739–746.Eldridge, K.G., Davidson, J., Harwood, C.E. & van Wyk, G. 1993. Eucalypt Domestication andBreed<strong>in</strong>g. Oxford, Clarendon Press.Elo, A., Lemmety<strong>in</strong>en, J., Turunen, M.-L., Tikka, T. & Sopanen, T. 2001. Three MADS-box genessimilar to APETALA 1 and FRUITFULL from silver birch (Betula pendula). Physiol. Plant 112:95–103.Emebiri, L.C., Devey, M.E., Matheson, A.C. & Slee, M.U. 1997. L<strong>in</strong>kage of RAPD <strong>marker</strong>s toNESTUR, a stem growth <strong>in</strong>dex <strong>in</strong> radiata p<strong>in</strong>e seedl<strong>in</strong>gs. Theor. Appl. Genet. 95: 119–124.Emebiri, L.C., Devey, M.E., Matheson, A.C. & Slee, M.U. 1998a. Age-related changes <strong>in</strong> the expressionof QTLs for growth <strong>in</strong> radiata p<strong>in</strong>e seedl<strong>in</strong>gs. Theor. Appl. Genet. 97: 1053–1061.Emebiri, L.C., Devey, M.E., Matheson, A.C. & Slee, M.U. 1998b. Interval mapp<strong>in</strong>g of quantitativetrait loci affect<strong>in</strong>g NESTUR, a stem growth efficiency <strong>in</strong>dex of radiata p<strong>in</strong>e seedl<strong>in</strong>gs. Theor. Appl.Genet. 97: 1062–1068.Ersoz, E.S., Gonzalez-Mart<strong>in</strong>ez, S., Gill, G., Brown G, Morse, A., Davis, J., White, T. & Neale,D.B. 2004. SNP discovery <strong>in</strong> candidate genes for disease resistance (pitch canker and fusiformrust) and drought tolerance <strong>in</strong> loblolly p<strong>in</strong>e, Abstract W95. In Plant & Animal Genomes XIIConference, San Diego, CA, USA.FAO. FAOSTAT <strong>in</strong>teractive database (available at http://faostat.fao.org/default.aspx).FAO. 2003. Molecular <strong>marker</strong>-<strong>assisted</strong> <strong>selection</strong> as a potential tool for genetic improvement of crops,forest trees, livestock and fish <strong>in</strong> develop<strong>in</strong>g countries. Summary Document to Conference 10 (17November to 14 December 2003) of the FAO Biotechnology Forum (available at www.fao.org/biotech/logs/C10/summary.htm).Frewen, B.E., Chen, T.H.H., Howe, G.T., Davis, J., Rohde, A., Boerjan, W. & Bradshaw, H.D.Jr.2000. Quantitative trait loci and candidate gene mapp<strong>in</strong>g of bud set and bud flush <strong>in</strong> Populus.Genetics 154: 837–845.Gan, S., Shi, J., Li, M., Wu, K., Wu, J. & Bai, J. 2003. Moderate density molecular maps of Eucalyptusurophylla S.T. Blake and E. tereticornis Smith genomes based on RAPD <strong>marker</strong>s. Genetica 118:59–67.Gion, J.-M., Rech, P., Grima-Pettenati, J., Verhaegen, D. & Plomion, C. 2000. Mapp<strong>in</strong>g candidategenes <strong>in</strong> Eucalyptus with emphasis on lignification genes. Mol. Breed. 6: 441–449.Gossel<strong>in</strong>, I., Zhou, Y., Bousquet, J. & Isabel, N. 2002. Megagametophyte-derived l<strong>in</strong>kage maps ofwhite spruce (Picea glauca) based on RAPD, SCAR and ESTP <strong>marker</strong>s. Theor. Appl. Genet. 104:987–997.Grattapaglia, D. & Sederoff, R.R. 1994. Genetic l<strong>in</strong>kage maps of Eucalyptus grandis andEucalyptus urophylla us<strong>in</strong>g a pseudo-testcross mapp<strong>in</strong>g strategy and RAPD <strong>marker</strong>s. Genetics 137:1121–1137.
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iiiContentsAcknowledgementsForeword
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Section v - marker-assisted selecti
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viiForewordSince almost the beginni
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ixAbbreviations and acronymsAATFAB-
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xiFIVIMSFNPFSCFSILGABIGASGCAGCPGDPG
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xiiiOBMOECDOIEOPVPAGEPBRsPCRPGRFAPI
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xvContributorsAmalia BaroneProfesso
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xviiElcio Perpétuo GuimarãesSenio
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xixAndrea SonninoSenior Agricultura
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Chapter 1Marker-assisted selection
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Chapter 1 - An overview of the issu
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Chapter 19Technical, economic and p
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This book provides a comprehensive