marker-assisted selection in wheat - ictsd

44Marker-assisted selection – Current status and future perspectives in crops, livestock, forestry and fishChampoux, M.C., Sarkarung, G.W.S., Mackill, D.J., O’Toole, J.C., Huang, N. & McCouch, S.R.1995. Locating genes associated with root morphology and drought avoidance via linkage tomolecular markers. Theor. Appl. Genet. 90: 969–981.Chen, X., Cho Y.G. & McCouch, S.R. 2002. Sequence divergence of rice microsatellites in Oryza andother plant species. Mol. Genet. Genomics 268: 331–343.Chen, X., Temnykh, S., Xu, Y., Cho, X.G. & McCouch, S.R. 1997. Development of a microsatelliteframework map providing genome-wide coverage in rice (Oryza sativa L.). Theor. Appl. Genet.95: 553–567.Comai, L., Young, K., Till, B.J., Reynolds, S.H., Greene, E.A., Codomo, C.A., Enns, L.C., Johnson,J.E., Burtner, C., Odden, A.R. & Henikoff, S. 2004. Efficient discovery of DNA polymorphismsin natural populations by Ecotilling. Plant J. 37: 778–786.Conaway-Bormans, C.A., Marchetti, M.A., Johnson, C.W., McClung, A.M. &Park, W.D. 2003. Molecular markers linked to the blast resistance gene Pi-z in rice for use inmarker-assisted selection. Theor. Appl. Genet. 107: 1014–1020.Davierwala, A.P., Reddy, A.P., Lagu, M.D., Ranjekar, P.K. & Gupta, V.S. 2001. Marker assistedselection of bacterial blight resistance genes in rice. Biochem. Genet. 39: 261–278.Dekkers, J.C.M. 2004. Commercial application of marker- and gene-assisted selection in livestock:strategies and lessons. J. Anim. Sci. 82 E-Suppl: E313–E328.Doyle, J.J., Morgante, M., Tingey S.V. & Powell, W. 1998. Size homoplasy in chloroplast microsatellitesof wild perennial relatives of soybean (Glycine subgenus Glycine). Mol. Biol. Evol. 15:215–218.Edwards, J.D., Lee, V.M. & McCouch, S.R. 2004. Sources and predictors of resolvable indelpolymorphism assessed using rice as a model. Mol. Genet. Genomics 271: 298–307.Fazio, G., Staub, J.E. & Chung, S.M. 2002. Development and characterization of PCR markers incucumber. J. Am. Soc. Hortic. Sci. 127: 545–557.Ferguson, M.E., Burow, M.D., Schulze, S.R., Bramel, P.J., Paterson, A.H., Kresovich, S. & Mitchell,S. 2004. Microsatellite identification and characterization in peanut (A. hypogaea L.). Theor. Appl.Genet. 108: 1064–1070.Feschotte, C., Jiang N. & Wessler, S.R. 2002. Plant transposable elements: where genetics meetsgenomics. Nature Revs. Genet. 3: 329–341.Flint-Garcia, S.A., Thornsberry, J.M. & Buckler, E.S.T. 2003. Structure of linkage disequilibrium inplants. Ann. Rev. Plant Biol. 54: 357–374.Flowers, T.J., Koyama, M.L., Flowers, S.A., Sudhakar, C., Singh, K.P. & Yeo, A.R. 2000. QTL: theirplace in engineering tolerance of rice to salinity. J. Exp. Bot. 51: 99–106.Garris A., McCouch, S. & Kresovich, S. 2003. Population structure and its effect on haplotype diversityand linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165:759–769.Ghislain, M., Spooner, D.M., Rodriguez, F., Villamon, F., Nunez, J., Vasquez, C., Waugh, R. &Bonierbale, M. 2004. Selection of highly informative and user friendly microsatellites (SSRs) forgenotyping of cultivated potato. Theor. Appl. Genet. 108: 881–890.Goodwin, I.D., Aitken, E.A.B. & Smith, L.W. 1997. Application of inter-simple sequence repeat(ISSR) markers to plant genetics. Electrophoresis 18: 1524–1528.Gregorio, G.B. 2002. Progress in breeding for trace minerals in staple crops. J. Nutr. 132:500S–502S.