Chapter 15 – Marker-<strong>assisted</strong> <strong>selection</strong> <strong>in</strong> forestry species 301Lesp<strong>in</strong>asse, D., Grivet, L., Troispoux, V., Rodier-Goud, M., P<strong>in</strong>ard, F. & Segu<strong>in</strong>, M. 2000.Identification of QTLs <strong>in</strong>volved <strong>in</strong> resistance to South American leaf blight (Microcyclus ulei) <strong>in</strong>the rubber tree. Theor. Appl. Genet. 100: 975–984.Lesp<strong>in</strong>asse, D., Rodier-Goud, M., Grivet, L., Leconte, A., Legnate, H. & Segu<strong>in</strong>, M. 1999. A saturatedl<strong>in</strong>kage map of rubber tree (Hevea spp.) based on RFLP, AFLP, microsatellite and isozyme<strong>marker</strong>s. Theor. Appl. Genet. 100: 127–138.Liepman, A.H., Wilkerson, C.G. & Keegstra, K. 2005. Expression of cellulose synthase-like (Csl)genes <strong>in</strong> <strong>in</strong>sect cells reveals that CslA family members encode mannan synthases. Proc. Nat. Acad.Sci. USA 102: 2221–2226.Long, A.D. & Langley, C.H. 1999. The power of association studies to detect the contribution ofcandidate genetic loci to variation <strong>in</strong> complex traits. Gen. Res. 9: 720–731.MacKay, J., Bousquet, J., Cooke, J., Isabel, N., Pavy, N., Regan, S., Retzel, E. & Ségu<strong>in</strong>, A. 2005.Functional genomic <strong>in</strong>vestigations of wood formation and defense response <strong>in</strong> trees, and beyond,Abstract W101. In Plant & Animal Genomes XII Conference, San Diego, CA, USA.Marcucci Poltri, S.N., Zelena, N., Rodriguez Traverso, J., Gelid, P. & Hopp, H.E. 2003. Selection ofa seed orchard of Eucalyptus dunnii based on genetic diversity criteria calculated us<strong>in</strong>g molecular<strong>marker</strong>s. Tree Physiol. 23: 625–632.Marques, C.M., Araújo, J.A., Ferreira, J.G., Whetten, R., O’Malley, D.M., Liu, B.-H. & Sederoff, R.1998. AFLP genetic maps of Eucalyptus globulus and E. tereticornis. Theor. Appl. Genet. 96: 727–737.Marques, C.M., Vasquez-Kool, J., Carocha, V.J., Ferreira, J.G., O’Malley, D.M., Liu, B.-H. &Sederoff, R. 1999. Genetic dissection of vegetative propagation traits <strong>in</strong> Eucalyptus tereticornis andE. globulus. Theor. Appl. Genet. 99: 936–946.Marques, C.M., Brondani, R.P.V., Grattapaglia, D. & Sederoff, R. 2002. Conservation and syntenyof SSR loci and QTLs for vegetative propagation <strong>in</strong> four Eucalyptus species. Theor. Appl. Genet.105: 474–478.Mehta, P., Sivaprakash, K., Parani, M., Venkataraman, G. & Parida, A.K. 2005. Generation andanalysis of expressed sequence tags from the salt tolerant mangrove species Avicennia mar<strong>in</strong>a(Forsk.) Vierh. Theor. Appl. Genet. 110: 416–424.Moran, G.F., Thamarus, K.A., Raymond, C.A., Qiu, D., Uren, T. & Southerton, S. 2002. Genomicsof Eucalyptus wood traits. Ann. For. Sci. 59: 645–650.Morgante, M. & Salam<strong>in</strong>i, F. 2003. From plant genomics to breed<strong>in</strong>g practice. Curr. Op<strong>in</strong>. Biotech.14: 214–219.Mouradov, A., Glassick, T., Hamdorf, B., Murphy, L., Fowler, B., Marla, S. & Teasdale, R.D. 1998.NEEDLY, a P<strong>in</strong>us radiata ortholog of FLORICAULA/LEAFY genes, expressed <strong>in</strong> both reproductiveand vegetative meristems. Proc. Nat. Acad. Sci. USA 95: 6537–6542.Mouradov, A., Hamdorf, B., Teasdale, R.D., Kim, J.T. W<strong>in</strong>ter, K.U. & Theißen, G.A. 1999. DEF/GLO-like MADS-Box gene from a gymnosperm: P<strong>in</strong>us radiata conta<strong>in</strong>s an ortholog of angiospermB class floral homeotic genes. Dev. Genet. 25: 245–252.Mukai, Y., Suyama, Y., Tsumura, Y., Kawahara, T., Yoshimaru, H., Kondo, T., Tomaru, N.,Kuramoto, N. & Murai, M. 1995. A l<strong>in</strong>kage map for sugi (Cryptomeria japonica) based on RFLP,RAPD and isozyme loci. Theor. Appl. Genet. 90: 835–840.Myburg, A.A., Griff<strong>in</strong>, A.R., Sederoff, R.R. & Whetten, R.W. 2003. Comparative genetic l<strong>in</strong>kagemaps of Eucalyptus grandis, Eucalyptus globulus and their F1 hybrid based on a double pseudobackcrossmapp<strong>in</strong>g approach. Theor. Appl. Genet. 107: 1028–1042.
302Marker-<strong>assisted</strong> <strong>selection</strong> – Current status and future perspectives <strong>in</strong> crops, livestock, forestry and fishNairn, C.J. & Haselkorn, T. 2005. Three loblolly p<strong>in</strong>e CesA genes expressed <strong>in</strong> develop<strong>in</strong>g xylem areorthologous to secondary cell wall CesA genes of angiosperms. New Phytologist 166: 907–915.Neale, D.B. & Savola<strong>in</strong>en, O. 2004. Association genetics of complex traits <strong>in</strong> conifers. Trends PlantSci. 9: 325–330.Neale, D.B., Sewell, M.M. & Brown, G.R. 2002. Molecular dissection of the quantitative <strong>in</strong>heritanceof wood property traits <strong>in</strong> loblolly p<strong>in</strong>e. Ann. For. Sci. 59: 595–605.Nelson, C.D., Nance, W.L. & Doudrick, R.L. 1993. A partial genetic l<strong>in</strong>kage map of Slash p<strong>in</strong>e (P<strong>in</strong>uselliottii Englem var. elliottii) based on random amplified polymorphic DNAs. Theor. Appl. Genet.87: 145–151.Nikles, D.G. 1996. The first 50 years of the evolution of forest tree improvement <strong>in</strong> Queensland. InM.J. Dieters, A.C. Matheson, D.G. Nikles, C.E. Harwood, & S.M. Walker, eds. Tree improvementfor susta<strong>in</strong>able tropical forestry, pp. 51–64. Proc. QFRI-IUFRO Conference, Caloundra,Queensland, Australia.Paglia, G.P., Olivieri, A.M. & Morgante, M. 1998. Towards second-generation STS (sequence-taggedsites) l<strong>in</strong>kage maps <strong>in</strong> conifers: a genetic map of Norway spruce (Picea abies K.). Mol. Gen. Genet.258: 466–478.Paoli, E.D. & Morgante, M. 2005. Nucleotide diversity and l<strong>in</strong>kage disequilibrium <strong>in</strong> a set of candidategenes for time of bud set <strong>in</strong> Picea abies, Abstract W106. In Plant & Animal Genomes XIIConference, San Diego, CA, USA.Paux, E., Tamasloukht, M., Ladouce, N., Sivadon, P. & Grima-Pettenati, J. 2004. Identification ofgenes preferentially expressed dur<strong>in</strong>g wood formation <strong>in</strong> Eucalyptus. Plant Mol. Biol. 55: 263–280.Paux, E., Carocha, V., Marques, C., Mendes de Sousa, A., Borralho, N., Sivadon, P. & Grima-Pettenati, J. 2005. Transcript profil<strong>in</strong>g of Eucalyptus xylem genes dur<strong>in</strong>g tension wood formation.New Phytol. 167: 89–100.Pavy, N., Laroche, J., Bousquet, J. & MacKay, J. 2005. Large-scale statistical analysis of secondaryxylem ESTs <strong>in</strong> p<strong>in</strong>e. Plant Mol. Biol. 57: 203–224.Peter, G. & Neale, D. 2004. Molecular basis for the evolution of xylem lignification. Curr. Op<strong>in</strong>.Plant Biol. 7: 737–742.Plomion, C., O’Malley, D.M. & Durel, C.E. 1995. Genomic analysis <strong>in</strong> maritime p<strong>in</strong>e (P<strong>in</strong>us p<strong>in</strong>aster).Comparison of two RAPD maps us<strong>in</strong>g selfed and open-poll<strong>in</strong>ated seeds of the same<strong>in</strong>dividual. Theor. Appl. Genet. 90: 1028–1034.Plomion, C., Bahrman, N., Costa, P., Dubos, C., Frigerio, J.-M., Lalanne, C., Madur, D., Pionneau,C. & Gerber, S. 2004. Proteomics for genetic and physiological studies <strong>in</strong> forest trees: application<strong>in</strong> maritime p<strong>in</strong>e. In S. Kumar & M. Fladung, eds. Molecular genetics and breed<strong>in</strong>g of forest trees,pp. 53–79. New York, USA, Haworth Press.Poke, F.S., Vaillancourt, R.E., Potts, B.M. & Reid, J.B. 2005. Genomic research <strong>in</strong> Eucalyptus.Genetica 125: 79–101.Pot, D., Eveno, E., Garnier-Géré, P. & Plomion, C. 2004. Association studies for wood properties <strong>in</strong>maritime p<strong>in</strong>e, Abstract W88. In Plant & Animal Genomes XII Conference, San Diego, CA, USA.Pritchard, J.K., Stephens, M., Rosenberg, N.A. & Donnelly, P. 2000. Association mapp<strong>in</strong>g <strong>in</strong> structuredpopulations. Am. J. Hum. Genet. 67: 170–181.Rem<strong>in</strong>gton, D.L., Whetten, R.W., Liu, B.-H. & O’Malley, D.M. 1999. Construction of an AFLPgenetic map with nearly complete coverage <strong>in</strong> P<strong>in</strong>us taeda. Theor. Appl. Genet. 98: 1279–1292.
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iiiContentsAcknowledgementsForeword
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Section v - marker-assisted selecti
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viiForewordSince almost the beginni
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ixAbbreviations and acronymsAATFAB-
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xiFIVIMSFNPFSCFSILGABIGASGCAGCPGDPG
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xiiiOBMOECDOIEOPVPAGEPBRsPCRPGRFAPI
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xvContributorsAmalia BaroneProfesso
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xviiElcio Perpétuo GuimarãesSenio
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xixAndrea SonninoSenior Agricultura
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Chapter 1Marker-assisted selection
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Chapter 19Technical, economic and p
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This book provides a comprehensive