Chapter 15 – Marker-<strong>assisted</strong> <strong>selection</strong> <strong>in</strong> forestry species 299Grattapaglia, D., Bertolucci, L.G. & Sederoff, R.R. 1995. Genetic mapp<strong>in</strong>g of QTLs controll<strong>in</strong>gvegetative propagation <strong>in</strong> Eucalyptus grandis and E. urophylla us<strong>in</strong>g a pseudo-testcross strategy andRAPD <strong>marker</strong>s. Theor. Appl. Genet. 90: 933–947.Grattapaglia, D., Bertolucci, L.G., Penchel, R. & Sederoff, R.R. 1996. Genetic mapp<strong>in</strong>g of quantitativetrait loci controll<strong>in</strong>g growth and wood quality traits <strong>in</strong> Eucalyptus grandis us<strong>in</strong>g a maternalhalf-sib family and RAPD <strong>marker</strong>s. Genetics 144: 1205–1214.Grattapaglia, D., Ribeiro, V.J. & Rezende, G.D.S.P. 2004. Retrospective <strong>selection</strong> of elite parenttrees us<strong>in</strong>g paternity test<strong>in</strong>g with microsatellite <strong>marker</strong>s: an alternative short term breed<strong>in</strong>g tacticfor Eucalyptus. Theor. Appl. Genet. 109: 192–199.Groover, A., Devey, M., Fiddler, T., Lee, J., Megraw, R., Mitchel-Olds, T., Sherman, B., Vujcic, S.,Williams, C. & Neale, D. 1994. Identification of quantitative trait loci <strong>in</strong>fluenc<strong>in</strong>g wood specificgravity <strong>in</strong> an outbred pedigree of loblolly p<strong>in</strong>e. Genetics 138: 1293–1300.Hanley, S., Barker, J.H.A., van Oijen, J.W., Aldam, C., Harris, S.L., Ahman, I., Larsson, S. &Karp, A. 2002. A genetic l<strong>in</strong>kage map of willow (Salix vim<strong>in</strong>alis) based on AFLP and microsatellite<strong>marker</strong>s. Theor. Appl. Genet. 105: 1087–1096.Harwood, C.E., Ha Huy Th<strong>in</strong>h, Tran Ho Quang, Butcher, P.A. & Williams, E.R. 2004. The effectof <strong>in</strong>breed<strong>in</strong>g on early growth of Acacia mangium <strong>in</strong> Vietnam. Silv. Genet. 53: 65–69Hayashi, E., Kondo, T., Terada, K., Kuramoto, N. Goto, Y., Okamura, M. & Kawasaki, H. 2001.L<strong>in</strong>kage map of Japanese black p<strong>in</strong>e based on AFLP and RAPD <strong>marker</strong>s <strong>in</strong>clud<strong>in</strong>g <strong>marker</strong>s l<strong>in</strong>kedto resistance aga<strong>in</strong>st the p<strong>in</strong>e needle gall midge. Theor. Appl. Genet. 102: 871–875.Hertzberg, M., Aspeborg, H., Schrader, J., Andersson, A., Erlandsson, R., Blomqvist, K., Bhalerao,R., Uhlén, M., Teeri, T.T., Lundeberg, J., Sundberg, B., Nilsson, P. & Sandberg, G. 2001. A transcriptionalroadmap to wood formation. Proc. Nat Acad. Sci. USA 98: 14732–14737.Hu, W.-J., Hard<strong>in</strong>g, S.A., Lung, J., Popko, J.L., Ralph, J., Stokke, D.D., Tsai, C.-J. & Chiang,V.L. 1999. Repression of lign<strong>in</strong> biosynthesis promotes cellulose accumulation and growth. NatureBiotech. 17: 808–812.Hurme, P., Sillanpaa, M.J., Arjas, E., Repo, T. & Savola<strong>in</strong>en, O. 2000. Genetic basis of climatic adaptation<strong>in</strong> Scots p<strong>in</strong>e by Bayesian quantitative trait locus analysis. Genetics 156: 1309–1322.International HapMap Consortium. 2003. The International HapMap Project. Nature 426:789–796.Jermstad, K.D., Bassoni, D.L., Jech, K.S., Ritchie, G.A., Wheeler, N.C. & Neale, D.B. 2003.Mapp<strong>in</strong>g of quantitative trait loci controll<strong>in</strong>g adaptive traits <strong>in</strong> coastal Douglas fir. III. QTL byenvironment <strong>in</strong>teractions. Genetics 165: 1489–1506.Jermstad, K.D., Bassoni, D.L., Jech, K.S., Wheeler, N.C. & Neale, D.B. 2001a. Mapp<strong>in</strong>g of quantitativetrait loci controll<strong>in</strong>g adaptive traits <strong>in</strong> coastal Douglas fir. I. Tim<strong>in</strong>g of vegetative bud flush.Theor. Appl. Genet. 102: 1142–1151.Jermstad, K.D., Bassoni, D.L., Wheeler, N.C., Anekonda, T.S., Aitken, S.N., Adams, W.T. &Neale, D.B. 2001b. Mapp<strong>in</strong>g of quantitative trait loci controll<strong>in</strong>g adaptive traits <strong>in</strong> coastal Douglasfir. II. Spr<strong>in</strong>g and fall cold hard<strong>in</strong>ess. Theor. Appl. Genet. 102: 1152–1158.Jermstad, K.D., Bassoni, D.L., Wheeler, N.C. & Neale, D.B. 1998. A sex-averaged l<strong>in</strong>kage map <strong>in</strong>coastal Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco) based on RFLP and RAPD <strong>marker</strong>s.Theor. Appl. Genet. 97: 762–770.Johnson, G.R., Wheeler, N.C. & Strauss, S.H. 2000. F<strong>in</strong>ancial feasibility of <strong>marker</strong>-aided <strong>selection</strong><strong>in</strong> Douglas fir. Can. J. For. Res. 30: 1942–1952.
300Marker-<strong>assisted</strong> <strong>selection</strong> – Current status and future perspectives <strong>in</strong> crops, livestock, forestry and fishJoshi, C.P. 2004. Molecular genetics of cellulose biosynthesis <strong>in</strong> trees. In S. Kumar & M. Fladung,eds. Molecular genetics and breed<strong>in</strong>g of forest trees, pp. 141–165. New York, USA, HaworthPress.Joshi, C.P., Wu, L. & Chiang, V.L. 1999. A novel xylem specific and tension stress responsive cellulosesynthase gene from quak<strong>in</strong>g aspen, Abstract p.19. In M. Campbell, ed. Forest Biotechnology99. Oxford, UK, Oxford University Press.Jouan<strong>in</strong>, L. & Goujon, T. 2004. Tun<strong>in</strong>g lign<strong>in</strong> metabolism through genetic eng<strong>in</strong>eer<strong>in</strong>g <strong>in</strong> trees. InS. Kumar & M. Fladung, eds. Molecular genetics and breed<strong>in</strong>g of forest trees, pp. 167–191. NewYork, USA, Haworth Press.Junghaus, D.T., Alfenas, A.C., Brommonschenkel, S.H., Oda,S., Mello, E.J. & Grattapaglia, D.2003. Resistance to rust (Pucc<strong>in</strong>ia psidii W<strong>in</strong>ter) <strong>in</strong> Eucalyptus: mode of <strong>in</strong>heritance and mapp<strong>in</strong>g ofa major gene with RAPD <strong>marker</strong>s. Theor. Appl. Genet. 108: 175–180.Kaya, Z., Sewell, M.M. & Neale, D.B. 1999. Identification of quantitative trait loci <strong>in</strong>fluenc<strong>in</strong>g annualheight- and diameter-<strong>in</strong>crement growth <strong>in</strong> loblolly p<strong>in</strong>e. Theor. Appl. Genet. 98: 586–592.Kha, L.D., Hai, N.D. & V<strong>in</strong>h, H.Q. 1998. Clonal tests and propagation options for naturalhybrids between Acacia manguim and A. auriculiformis. In J.W. Turnbull H.R. Crompton & K.P<strong>in</strong>yopusarek, eds. Recent developments <strong>in</strong> acacia plant<strong>in</strong>g, pp. 203–210. ACIAR Proc. No. 82,Canberra, ACIAR.Kirst, M., Myburg, A.A., De León, J.P.G., Kirst, M.E., Scott, J. & Sederoff, R. 2004. Coord<strong>in</strong>atedgenetic regulation of growth and lign<strong>in</strong> revealed by quantitative trait locus analysis of cDNAmicroarray data <strong>in</strong> an <strong>in</strong>terspecific backcross of Eucalyptus. Plant Physiol. 135: 2368–2378.Krutovskii, K.V. & Neale, D.B. 2001. Forest genomics for conserv<strong>in</strong>g adaptive genetic diversity.FAO Forest Genetic Resources Work<strong>in</strong>g Paper FGR/3 (E). Rome (available at www.fao.org/DOCREP/003/X6884E/X6884E00.HTM).Krutovskii, K.V., Vollmer, S.S., Sorensen, F.C., Adams, W.T., Knapp, S.J. & Strauss, S.H. 1998.RAPD genome maps of Douglas fir. J. Hered. 89: 197–205.Krutovsky, K.V., Troggio, M., Brown, G., Jermstad, K.D. & Neale, D.B. 2004. Comparative mapp<strong>in</strong>g<strong>in</strong> the P<strong>in</strong>aceae. Genetics 168: 447–461.Krutovsky, K.V., Pande, P., Jermstad, K.D., Howe, G.T., St. Clair, J.B., Wheeler, N.C. & Neale, D.B.2005. Nucleotide diversity and l<strong>in</strong>kage disequilibrium <strong>in</strong> adaptive trait related candidate genes <strong>in</strong>Douglas fir, Abstract W110. In Plant & Animal Genomes XII Conference, San Diego, CA, USA.Kubisiak T.L., Nelson, C.D., Nance, W.L. & St<strong>in</strong>e, M. 1996. Comparison of RAPD l<strong>in</strong>kage mapsconstructed for a s<strong>in</strong>gle longleaf p<strong>in</strong>e from both haploid and diploid mapp<strong>in</strong>g populations. For.Genet. 3: 203–211.Kumar, S., Spelman, R.J., Garrick, D.J., Richardson, T.E., Lausberg, M. & Wilcox, P.L. 2000.Multiple <strong>marker</strong> mapp<strong>in</strong>g of wood density loci <strong>in</strong> an outbred pedigree of radiata p<strong>in</strong>e. Theor. Appl.Genet. 100: 926–933.Kuramoto, N., Kondo, T., Fujisawa, Y., Nakata, R., Hayashi, E. & Goto, Y. 2000. Detection ofquantitative trait loci for wood strength <strong>in</strong> Cryptomeria japonica. Can. J. For. Res. 30: 1525–1533.Lander, E.S. & Botste<strong>in</strong>, D. 1989. Mapp<strong>in</strong>g Mendelian factors underly<strong>in</strong>g quantitative traits us<strong>in</strong>gRFLP l<strong>in</strong>kage maps. Genetics 121: 185–199.Lerceteau, E., Plomion, C. & Andersson, B. 2000. AFLP mapp<strong>in</strong>g and detection of quantitative traitloci (QTLs) for economically important traits <strong>in</strong> P<strong>in</strong>us sylvestris: a prelim<strong>in</strong>ary study. Mol. Breed.6: 451–458.
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iiiContentsAcknowledgementsForeword
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Section v - marker-assisted selecti
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viiForewordSince almost the beginni
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ixAbbreviations and acronymsAATFAB-
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xiFIVIMSFNPFSCFSILGABIGASGCAGCPGDPG
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xiiiOBMOECDOIEOPVPAGEPBRsPCRPGRFAPI
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xvContributorsAmalia BaroneProfesso
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xviiElcio Perpétuo GuimarãesSenio
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xixAndrea SonninoSenior Agricultura
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Chapter 1Marker-assisted selection
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This book provides a comprehensive