Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...

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Chapter 5 Perform Reanalysis
Secondary reanalysis
Secondary reanalysis
Overview Secondary reanalysis starts at the Single Tag Analysis stage. This
workflow stage generates application-specific results such as base
space sequences, alignment, tag counting from the colorspace
sequence reads, and ".csfasta" file. The external analysis pipelines
will also be executed if they are plugged-in and turned-on in the
selected analysis setting.
The secondary reanalysis allows you to selectively apply secondary
analysis settings to individual samples. You are not forced to
reanalyze all samples as you are in primary reanalysis. The
downstream effect is that a new analysis is created. All Single Tag
analyses are rerun.
To perform a secondary reanalysis:
1. Click Reanalyze Secondary to
reanalyze the secondary analysis data.
Click the icon for more information.
100 Applied Biosystems SOLiD 4 System SETS Software User Guide