Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
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Primary analysis inputs and outputs<br />
<strong>Applied</strong> <strong>Biosystems</strong> SOLiD 4 <strong>System</strong> <strong>SETS</strong> <strong>Software</strong> <strong>User</strong> <strong>Guide</strong><br />
Appendix D Advanced Topic: Primary Analysis<br />
Primary analysis workflow D<br />
The input images are in the following files:<br />
Focal Map<br />
/data/images/{run.name}/{run.name}_FOCALMAP_V1<br />
Ligation Cycle<br />
/data/images/{run.name}/{run.name}_F3_P1_01_V1<br />
/data/images/{run.name}/{run.name}_F3_P1_02_V1<br />
…<br />
…<br />
/data/images/{run.name}/{run.name}_R3_P1_01_V1<br />
...<br />
...<br />
$sampleJobFolder =<br />
/data/results/{instrument.name}/{run.name}/{sample.name}<br />
/jobs<br />
$sampleResultFolder =<br />
/data/results/{instrument.name}/{run.name}/{sample.name}<br />
/results<br />
Job analysis parameter and temporary files for the Focal Map<br />
$sampleJobFolder/postBeadFindingPrimary.[JobID]<br />
Job analysis parameters and temporary files for ligation cycle<br />
color calls<br />
$sampleJobFolder/postScanSlidePrimary.[JobID]<br />
$sampleJobFolder/postScanSlidePrimary.[JobID]<br />
…<br />
…<br />
Job analysis parameters and temporary files for<br />
postPrimerSetPrimary<br />
$sampleJobFolder/postPrimerSetPrimary.[JobID]<br />
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