Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
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3. Run the following command:<br />
<strong>Applied</strong> <strong>Biosystems</strong> SOLiD 4 <strong>System</strong> <strong>SETS</strong> <strong>Software</strong> <strong>User</strong> <strong>Guide</strong><br />
Chapter 7 Manage Administrative Tasks<br />
Auto export in <strong>SETS</strong> 7<br />
jprimaryanalysis.sh –dir /data/results////jobs<br />
/postPrimerSetPrimary. --ini=parameters.ini<br />
This will run readbuilder and generate csfatsa output.<br />
To run barcoding:<br />
1. Log in to the linux cluster as user which can submit jobs to pbs<br />
(pipeline)<br />
2. Change directory (cd) to the postBarcodePrimary under jobs<br />
folder.<br />
3. Run the following command:<br />
jprimaryanalysis.sh –dir /data/results////jobs /<br />
postBarcodePrimary. --ini=parameters.ini<br />
This will run barcoding and split the csfasta into libraries as<br />
defined in the original run configuration. See the diagram<br />
below.<br />
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