Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
Applied Biosystems SOLiD™ 4 System SETS Software User Guide ...
You also want an ePaper? Increase the reach of your titles
YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.
Appendix D Advanced Topic: Primary Analysis<br />
Primary analysis workflow D<br />
Color-space F3 raw reads for library (.csfasta)<br />
$sampleResultFolder/libraries/{library.name}/primary.[17<br />
-<br />
digittimestamp1]/reads/{run.name}_{sample.name}_F3.csfas<br />
ta<br />
Color-space BC raw reads for library (.csfasta)<br />
$sampleResultFolder/libraries/{library.name}/primary.[17<br />
-<br />
digittimestamp]/reads/{run.name}_{sample.name}_BC.csfast<br />
a<br />
F3 QV (.qual) file for library<br />
$sampleResultFolder//libraries/{library.name}/primary.[1<br />
7-<br />
digittimestamp]/reads/{run.name}_{sample.name}_F3_QV.qua<br />
l<br />
BC QV (.qual) file for library<br />
$sampleResultFolder//libraries/{library.name}/primary.[1<br />
7-<br />
digittimestamp]/reads/{run.name}_{sample.name}_BC_QV.qua<br />
l<br />
F3 Primary analysis statistics file (.stats)<br />
$sampleResultFolder/primary.[17-<br />
digittimestamp]/reads/{run.name}_{sample.name}_F3.stats<br />
BC Primary analysis statistics file (.stats)<br />
$sampleResultFolder/primary.[17-<br />
digittimestamp]/reads/{run.name}_{sample.name}_BC.stats<br />
F3 Primary analysis statistics file (.stats) for library<br />
$sampleResultFolder/libraries/{library.name}/primary.[17<br />
-<br />
digittimestamp]/reads/{run.name}_{sample.name}_F3.stats<br />
<strong>Applied</strong> <strong>Biosystems</strong> SOLiD 4 <strong>System</strong> <strong>SETS</strong> <strong>Software</strong> <strong>User</strong> <strong>Guide</strong><br />
167