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Applied Biosystems SOLiD 4 System
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Applied Biosystems SOLiD 4 System
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Applied Biosystems SOLiD 4 System
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How to use this guide Applied Biosy
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1 ������� � SETS So
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Naming convention for sequencing re
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SETS homepage Applied Biosystems SO
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Applied Biosystems SOLiD 4 System
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2 ������� � SETS So
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SOLiD 4 System Software workflow A
- Page 21 and 22: Log in to SETS Applied Biosystems S
- Page 23 and 24: Define primary analysis settings Ap
- Page 25 and 26: Primary analysis parameters 5. Clic
- Page 27 and 28: Parameter Description Applied Biosy
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- Page 31 and 32: Parameter Description Application D
- Page 33 and 34: Define secondary analysis settings
- Page 35 and 36: Chapter 2 Prepare Run Settings Set
- Page 37 and 38: Load a Reference Sequence Specify a
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- Page 43 and 44: Note: For in-progress runs, you can
- Page 45 and 46: Note: Refer to the Imaging Metrics
- Page 47 and 48: Chapter 3 Monitor the Run in SETS V
- Page 49 and 50: View sample data Applied Biosystems
- Page 51 and 52: Troubleshoot failed jobs Sample ana
- Page 53 and 54: Colorcall Jobs Applied Biosystems S
- Page 55 and 56: Filter Fasta fails Applied Biosyste
- Page 57 and 58: View History View Run History in SE
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- Page 61 and 62: System Logs Applied Biosystems SOLi
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- Page 65 and 66: Imaging Metrics Report Applied Bios
- Page 67 and 68: Cycle Heat Map Report Select a heat
- Page 69 and 70: Chapter 4 View Reports View overall
- Page 71: Exposure Time Report Applied Biosys
- Page 75 and 76: Determine the optimal titration poi
- Page 77 and 78: View sample reports Applied Biosyst
- Page 79 and 80: Resizing images Applied Biosystems
- Page 81 and 82: Scaled data Applied Biosystems SOLi
- Page 83 and 84: Angle data Applied Biosystems SOLiD
- Page 85 and 86: View Analysis Reports Applied Biosy
- Page 87 and 88: View analysis Data Files View Analy
- Page 89 and 90: Auto-Correlation Report Applied Bio
- Page 91 and 92: Error Profiles Report Applied Biosy
- Page 93 and 94: Master Report Tool Generate a Maste
- Page 95 and 96: Chapter 4 View Reports Master Repor
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- Page 99 and 100: Chapter 5 Perform Reanalysis Primar
- Page 101 and 102: Effect on the current run Applied B
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- Page 105 and 106: View Multiplexing Series in SETS Ac
- Page 107 and 108: Set up Multiplexing run in ICS Crea
- Page 109 and 110: Multiplexing Assignment report Appl
- Page 111 and 112: Reassign Run Applied Biosystems SOL
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- Page 115 and 116: Auto export in SETS Applied Biosyst
- Page 117 and 118: Auto export with JMS broker and Exp
- Page 119 and 120: 3. Run the following command: Appli
- Page 121 and 122: Manually configure the RSA keys App
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Change export for current run only
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Event notifications and email servi
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Applied Biosystems SOLiD 4 System
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Delete runs Applied Biosystems SOLi
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Chapter 7 Manage Administrative Tas
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A Overview Applied Biosystems SOLiD
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Appendix A Web Services WSDL A Bind
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B Applied Biosystems SOLiD 4 Syste
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Appendix B Advanced Topic: Data Ana
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Applied Biosystems SOLiD 4 System
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Applied Biosystems SOLiD 4 System
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Appendix B Advanced Topic: Data Ana
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Complementing color-space data Appl
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Applied Biosystems SOLiD 4 System
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Data analysis considerations Unders
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SNPs and errors High accuracy for S
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Sampling Allele ratio Applied Biosy
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C Saving data Applied Biosystems SO
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Applied Biosystems SOLiD 4 System
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D What is primary analysis? Applied
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Primary analysis workflow Applied B
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Primary analysis inputs and outputs
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Appendix D Advanced Topic: Primary
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Storage requirements for primary an
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Appendix D Advanced Topic: Primary
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Appendix D Advanced Topic: Primary
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Redo the read-filtering process App
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Image metrics Applied Biosystems SO
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Applied Biosystems SOLiD 4 System
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Usage Validation and observed quali
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Key files generated by primary anal
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.spch files Applied Biosystems SOLi
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Troubleshooting analysis failure Ap
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Applied Biosystems SOLiD 4 System
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E Applied Biosystems SOLiD 4 Syste
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LICENSE Appendix E Software License
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Appendix E Software License Agreeme
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Appendix E Software License Agreeme
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Appendix E Software License Agreeme
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Alignment Matrix The alignment matr
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Applied Biosystems SOLiD 4 System
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Glossary WFA A Workflow Analysis (W
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Related documentation Document BioS
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Part Number 4448411 Rev. B 04/2010